On Thursday, 14 February 2013 at 18:31:35 UTC, bioinfornatics
wrote:
Mr.Bio, what usage cases you'll be interested in, other than
those counters?
some idea such as letter counting:
rename identifier
trimming sequence from quality value to cutoff
convert to a binary format
convert to fasta + sff
merge close sequence to one concenus
create a brujin graph
more idea later
OK. I posted the parser here:
http://dpaste.dzfl.pl/37b893ed
This runs on the 2.061. I'll have to make a few changes if you
need it to run 2.060, to get around some 2.060 specific bugs.
This contains strictly only the parser. If you want, I'll post
the async file reading stuff I wrote to interface with it.
The example sections should give you a quick idea of how to use
it.
Tell me what you think about it.
