Perfect, thank you so much! Best, Marc
From: Eleftherios Garyfallidis <[email protected]> Date: Sunday, September 22, 2024 at 9:51 AM To: Jaskir, Marc <[email protected]> Cc: [email protected] <[email protected]> Subject: [External] Re: [DIPY] Re: Separating the fornix .trk file You don't often get email from [email protected]. Learn why this is important<https://aka.ms/LearnAboutSenderIdentification> Hi Marc, If you go back to the original data you may still have issues with coordinate systems. If you use dipy_horizon --cluster fornix.trk you will be able to select the parts of the fornix that you need and save them as new files. Best, Elef On Sun, Sep 22, 2024 at 9:18 AM Jaskir, Marc via DIPY <[email protected]<mailto:[email protected]>> wrote: Hi dipy developers, Actually, no worries about this – I’ll directly use the HCP-1065 atlas which has the fornices in separate .trk files. Sorry to bother. Best, Marc From: Jaskir, Marc <[email protected]<mailto:[email protected]>> Date: Saturday, September 21, 2024 at 4:21 PM To: [email protected]<mailto:[email protected]> <[email protected]<mailto:[email protected]>> Subject: Separating the fornix .trk file Hi dipy developers, I hope you are doing well. I’m interested in separating the fornix .trk file from the HCP-842 atlas in MNI space ICBM 2009a, which is distributed with dipy. I noticed this in the associated README: “For the Fornix (F) both left and right sides are included in one file. It is possible to easily separate them. Send an e-mail to [email protected]<mailto:[email protected]> to learn how.” Could you give me guidance on this? I’m analyzing diffusion MRI data collected from epilepsy patients. The fornix is of particular interest to us, and it would be great to have separate models for the left and right fornices. Thank you so much. Best, Marc Jaskir Neuroscience PhD candidate University of Pennsylvania _______________________________________________ DIPY mailing list -- [email protected]<mailto:[email protected]> To unsubscribe send an email to [email protected]<mailto:[email protected]> https://mail.python.org/mailman3/lists/dipy.python.org/ Member address: [email protected]<mailto:[email protected]>
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