Hi Lars,

Lars Sonchocky-Helldorf wrote:
https://svnweb.freebsd.org/ports/head/deskutils/preferences/Makefile?view=markup

https://svnweb.freebsd.org/ports/head/deskutils/systempreferences/Makefile?view=markup

Are those two different apps for the same purpose? How do they differ? Which 
one is the recommended one?

the two apps actually permit to set different things, they also have a different plugin architecture. They can also coexist
Preferences is more "NeXT" like, SystemPreferences more "Mac" like.
If you like to set themes and like to tweak certain GS variables, use SystemPreferences

Riccardo

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