First thought:

Is it possible that "App" is stuck in an upgrade loop?

It may be either creating a temporary table to hold the data, or just holding 
it in memory, then dropping the table and recreating it with same/new schema. 
Perhaps that's hitting an error late in the process and failing, then retrying 
later.

Perhaps check package and app logs as well as maria's?

If not that, then no clue from here, sorry.

Simon
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