Carl is correct. This is not an issue when using knitr to create markdown versions of the R lessons. Thanks to help from both Carl and Ramnath, I was able to set up the proper rendering for use with gh-pages. If we need to change the format for the new build system, we can easily update this. The hooks are currently contained in the file chunk-options.R, which is then sourced by each lesson.
https://github.com/swcarpentry/bc/blob/gh-pages/novice/r/chunk-options.R Original discussion: https://github.com/swcarpentry/bc/issues/524 John _______________________________________________ Discuss mailing list [email protected] http://lists.software-carpentry.org/mailman/listinfo/discuss_lists.software-carpentry.org
