At the Reproducible Research Hackathon in December we (i.e. Hilmar) developed a similar idea that people might want to check out / offer suggestions:
https://github.com/Reproducible-Science-Curriculum/rr-init <https://github.com/Reproducible-Science-Curriculum/rr-init> Pat > On Feb 3, 2015, at 5:03 PM, Aron Ahmadia <[email protected]> wrote: > > Very cool Dan! My only suggestion would be to create a top-level README file > describing the directory structure (and possibly referring back to your > script's URL), or print that out to the screen for the user to create their > own file or append to their own. > > The shell experts will probably want to add a little error-handling. At > minimum, the script should probably turn clobbering off before writing to > files. > > On Tue, Feb 3, 2015 at 4:59 PM, Daniel Chen <[email protected] > <mailto:[email protected]>> wrote: > Ever since Ivan showed Noble's PlosONE article [1] at the Harvard workshop, I > began to follow the template and teach it in workshops. > > I created a quick bash script [2] since I just started another project, and > thought it'd share with everyone. The code isn't pretty, but it does the > job. Improvements welcome! > > And hopefully it'll be a less barrier to entry for people to setup project > folders after they attend a workshop. > > > [1] > http://journals.plos.org/ploscollections/article?id=10.1371/journal.pcbi.1000424 > > <http://journals.plos.org/ploscollections/article?id=10.1371/journal.pcbi.1000424> > [2] https://github.com/chendaniely/computational-project-cookie-cutter > <https://github.com/chendaniely/computational-project-cookie-cutter> > > > - Dan > > _______________________________________________ > Discuss mailing list > [email protected] > <mailto:[email protected]> > http://lists.software-carpentry.org/mailman/listinfo/discuss_lists.software-carpentry.org > > <http://lists.software-carpentry.org/mailman/listinfo/discuss_lists.software-carpentry.org> > > _______________________________________________ > Discuss mailing list > [email protected] > http://lists.software-carpentry.org/mailman/listinfo/discuss_lists.software-carpentry.org -- Department of Microbiology & Immunology University of Michigan 1520A Medical Science Research Bldg. I 1150 West Medical Center Dr. Ann Arbor, MI 48109-0620 734.647.5801 (office) 734.936.2951 (lab) 734.764.3562 (fax) Twitter: @PatSchloss http://www.med.umich.edu/microbio/bio/schloss.htm http://www.mothur.org ===========================================================================
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