On Thu, Mar 03, 2016 at 11:20:05AM -0800, Tiffany Timbers wrote:
> … but this has led to my Bash Shell using the Anaconda version of R
> when I run Rscripts, and not the version of R I use in RStudio when
> I develop…

Possibly related issues [1,2,3,4].

> I have tried several things to fix this. For example, specifying the
> PATH in .bash_profile to be the R version I wanted to use didn't
> work unless I removed the PATH to Anaconda, but then I can't use
> conda to manage Python.  The only thing I could do to fix this was
> to delete the R and Rscript that Anaconda installed. I don't think
> this fix is optimal, is there a better way to deal with this?

Maybe Conda clobbers your adjusted PATH, and you need to make your
adjustments after Conda is finished messing with your environment
variables?

Cheers,
Trevor

[1]: https://github.com/ContinuumIO/anaconda-issues/issues/372
[2]: https://github.com/swcarpentry/windows-installer/issues/30
[3]: https://github.com/ContinuumIO/anaconda-issues/issues/307
[4]: https://github.com/swcarpentry/workshop-template/pull/230

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