Thanks both for the suggestions.

Editing my Makefile to include the absolute path didn't fix things:


Updating Pandoc manually did the trick. I was using the version from the 
package manager (and had checked for updates there, but only there).

Thanks very much - saved me a load of stress!

Cheers, 
Gerard

--
Gerard Capes
Research Applications, IT Services, University Of Manchester
0161 306 2509

Ten tips for writing excellent emails: 
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________________________________________
From: Discuss [[email protected]] on behalf of 
Raniere Silva [[email protected]]
Sent: 04 June 2016 08:04
To: [email protected]
Subject: Re: [Discuss] Can't get html to build from markdown [appeal for        
help]

Hi Gerard,

>> Steps to recreate the problem:
>>
>> $ git clone https://github.com/gcapes/git-course.git
>> $ cd git-course
>> $ make preview

I didn't had any issue. I also try

    $ make -B preview

and no problem.

>> pandoc -s -t html \
>>          --smart \
>>          --mathjax \
>>          --template=_layouts/page \
>>          --filter=tools/filters/blockquote2div.py \
>>          --filter=tools/filters/id4glossary.py \
>>          -Vheader="$(cat _includes/header.html)" -Vbanner="$(cat
>> _includes/banner.html)" -Vfooter="$(cat _includes/footer.html)"
>> -Vjavascript="$(cat _includes/javascript.html)" \
>>          -o 01-introduction.html 01-introduction.md
>> pandoc: Error running filter tools/filters/blockquote2div.py
>> tools/filters/blockquote2div.py not found in path
>> make: *** [01-introduction.html] Error 83
>>
>> $ pandoc -v
>> pandoc 1.12.2.1
>> Compiled with texmath 0.6.5.2, highlighting-kate 0.5.5.1.

Could you try update Pandoc to a newer version,
https://github.com/jgm/pandoc/releases?
The version you are using is a little old.

Cheers,
Raniere
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