I have just submitted a fix for this bug to the svn trunk.
Could you check out the sources using the following command and give it a
shot:
svn co svn://svn.code.sf.net/p/dmtcp/code/trunk dmtcp-trunk
Kapil
On Fri, Oct 4, 2013 at 4:57 PM, basma a.azeem
<basmaabdelaz...@hotmail.com>wrote:
> make command failed
>
>
> basma@basma-Satellite-A500:~/Dmtcp/dmtcp-2.0$ make
>
> DMTCP version: 2.0 (MTCP_VERSION = 81)
> Date built: Fri Oct 4 22:53:45 EET 2013
> config.log: ./configure
> Description: Ubuntu 12.10
> Codename: quantal
> Linux basma-Satellite-A500 3.5.0-28-generic #48-Ubuntu SMP Tue Apr 23
> 23:03:38 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> Compiler: gcc
> Using built-in specs.
> COLLECT_GCC=gcc
> COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.7/lto-wrapper
> Target: x86_64-linux-gnu
> Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro
> 4.7.2-2ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.7/README.Bugs
> --enable-languages=c,c++,go,fortran,objc,obj-c++ --prefix=/usr
> --program-suffix=-4.7 --enable-shared --enable-linker-build-id
> --with-system-zlib --libexecdir=/usr/lib --without-included-gettext
> --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.7
> --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu
> --enable-libstdcxx-debug --enable-libstdcxx-time=yes
> --enable-gnu-unique-object --enable-plugin --enable-objc-gc
> --disable-werror --with-arch-32=i686 --with-tune=generic
> --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu
> --target=x86_64-linux-gnu
> Thread model: posix
> gcc version 4.7.2 (Ubuntu/Linaro 4.7.2-2ubuntu1)
> GNU ld (GNU Binutils for Ubuntu) 2.22.90.20120924
> lrwxrwxrwx 1 root root 12 Jan 28 2013 /lib/x86_64-linux-gnu/libc.so.6 ->
> libc-2.15.so
>
> cd mtcp && make DMTCP_VERSION=2.0 CFLAGS="-g -O2" CPPFLAGS="" LDFLAGS=""
> CC=gcc build readmtcp
> make[1]: Entering directory `/home/basma/Dmtcp/dmtcp-2.0/mtcp'
> make[1]: Nothing to be done for `build'.
> make[1]: `readmtcp' is up to date.
> make[1]: Leaving directory `/home/basma/Dmtcp/dmtcp-2.0/mtcp'
> cd dmtcp && make
> make[1]: Entering directory `/home/basma/Dmtcp/dmtcp-2.0/dmtcp'
> Making all in src
> make[2]: Entering directory `/home/basma/Dmtcp/dmtcp-2.0/dmtcp/src'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/home/basma/Dmtcp/dmtcp-2.0/dmtcp/src'
> make[2]: Entering directory `/home/basma/Dmtcp/dmtcp-2.0/dmtcp'
> make[2]: Nothing to be done for `all-am'.
> make[2]: Leaving directory `/home/basma/Dmtcp/dmtcp-2.0/dmtcp'
> make[1]: Leaving directory `/home/basma/Dmtcp/dmtcp-2.0/dmtcp'
> cd plugin && make
> make[1]: Entering directory `/home/basma/Dmtcp/dmtcp-2.0/plugin'
> cd pid && make
> make[2]: Entering directory `/home/basma/Dmtcp/dmtcp-2.0/plugin/pid'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/home/basma/Dmtcp/dmtcp-2.0/plugin/pid'
> cd ipc && make
> make[2]: Entering directory `/home/basma/Dmtcp/dmtcp-2.0/plugin/ipc'
> g++ -I. -I../../dmtcp/jalib -I../../dmtcp/include -g -O2 -DHAVE_CONFIG_H
> -fPIC -g -c -o filewrappers.o file/filewrappers.cpp
> file/filewrappers.cpp: In function ‘char* canonicalize_file_name(const
> char*)’:
> file/filewrappers.cpp:664:18: error: inlining failed in call to
> always_inline ‘char* realpath(const char*, char*) throw ()’: function not
> inlinable
> file/filewrappers.cpp:718:29: error: called from here
> make[2]: *** [filewrappers.o] Error 1
> make[2]: Leaving directory `/home/basma/Dmtcp/dmtcp-2.0/plugin/ipc'
> make[1]: *** [ipc] Error 2
> make[1]: Leaving directory `/home/basma/Dmtcp/dmtcp-2.0/plugin'
> make: *** [plugin] Error 2
>
>
> ------------------------------
> From: ka...@ccs.neu.edu
> Date: Fri, 4 Oct 2013 15:04:09 -0400
> Subject: Re: FW: [Dmtcp-forum] OpenMPI program Checkpoint restart
>
> To: basmaabdelaz...@hotmail.com
> CC: dmtcp-forum@lists.sourceforge.net
>
> Hi Basma,
>
> Sorry for the delayed response. Could you please try out the dmtcp 2.0
> release that came out yesterday? We can proceed from there to find a fix
> for your problem.
>
> Kapil
>
>
> On Fri, Oct 4, 2013 at 3:02 PM, basma a.azeem <basmaabdelaz...@hotmail.com
> > wrote:
>
> Any Suggestions ?
>
> ------------------------------
> From: basmaabdelaz...@hotmail.com
> To: ka...@ccs.neu.edu
> Subject: RE: [Dmtcp-forum] OpenMPI program Checkpoint restart
> Date: Tue, 1 Oct 2013 02:04:58 +0200
>
>
> Thank you for your reply
>
> OpenMPI version : 1.6.5
> DMTCP version :dmtcp-1.2.8
> gcc version :gcc-4.7
> linux ubuntu Kernel version 3.5.0-28-generic
> my program is MPI/C Integer Sort of Nas Parallel Benchmark NPB 3.3 which
> run using 4 processes
>
> is this the right way and the only way to restart Openmpi programusing
> DMTCP? or what i did wrong?
> and can i try a MPI/Fortran program also?
>
>
> Thank you
>
> ------------------------------
> From: ka...@ccs.neu.edu
> Date: Sun, 29 Sep 2013 11:42:29 -0400
> Subject: Re: [Dmtcp-forum] OpenMPI program Checkpoint restart
> To: basmaabdelaz...@hotmail.com
> CC: dmtcp-forum@lists.sourceforge.net
>
> Hi,
>
> Thank you for contacting us.
>
> Could your provide us more information about the OpenMPI version that you
> are using? Also, DMTCP, libc, gcc, and kernel versions too.
>
> Thanks,
> Kapil
>
>
> On Sat, Sep 28, 2013 at 6:49 PM, basma a.azeem <
> basmaabdelaz...@hotmail.com> wrote:
>
> i need to use DMTCP to checkpoint and restart OpenMPI program
> DMTCP was installed on my machine
> and openmpi run normally
>
>
> so i ran the following command:
>
> :~$ dmtcp_checkpoint mpirun -np 4
> /home/basma/NPB3.3/NPB3.3/NPB3.3-MPI/bin/is.A.4
> my program is MPI/C Integer Sort of Nas Parallel Benchmark which run
> using 4 processes
>
> then i created a manual checkpoint using the dmtcp_coordinator
>
> so i had the following files in my home folder:
>
> ckpt_orterun_5721e6a7ff40367d-2937-52471e26.dmtcp
> ckpt_is.A.4_5721e6a7ff40367d-2942-52471e26.dmtcp
> ckpt_is.A.4_5721e6a7ff40367d-2944-52471e26.dmtcp
> ckpt_is.A.4_5721e6a7ff40367d-2947-52471e26.dmtcp
> ckpt_is.A.4_5721e6a7ff40367d-2950-52471e26.dmtcp
> dmtcp_restart_script.sh
> dmtcp_restart_script_5721e6a7ff40367d-2937-52471e26.sh
>
> i used the following command to restart:
>
> basma@basma-Satellite-A500:~$ ./dmtcp_restart_script.sh
>
> dmtcp_checkpoint (DMTCP + MTCP) 1.2.8
> Copyright (C) 2006-2011 Jason Ansel, Michael Rieker, Kapil Arya, and
> Gene Cooperman
> This program comes with ABSOLUTELY NO WARRANTY.
> This is free software, and you are welcome to redistribute it
> under certain conditions; see COPYING file for details.
> (Use flag "-q" to hide this message.)
>
> [3398] ERROR at connection.cpp:1137 in restore;
> REASON='JASSERT(jalib::Filesystem::FileExists(_path) == false) failed'
> _path = /run/shm/open_mpi.0001
> Message:
> **** File already exists! Checkpointed copy can't be restored.
> ****Delete the existing file and try again!
> dmtcp_restart (3398): Terminating...
>
>
> which file should i use to restart the OpenMPI program?and which command?
>
>
>
>
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>
>
>
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Free Intel webinars can help you accelerate application performance.
Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from
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