Hi,
I am currently testing the checkpoint-restart feature using DMTCP with
CP2K, a software package used for quantum chemistry and solid-state physics
(https://github.com/cp2k/cp2k).
However, I encountered an error during the process. Do you have any
suggestions on how to configure it properly? Your help would be much
appreciated.
Best regards,
Madan
[0;33m[2024-01-29T22:56:28.264, 41000, 41003, Warning] at
fileconnlist.cpp:457 in prepareShmList; REASON='JWARNING(false) failed'
area.name = /dev/zero (deleted)
Message: Ckpt/Restart of anonymous shared memory not supported.
slurmstepd: error: *** JOB 21040868 ON nid005128 CANCELLED AT
2024-01-29T23:00:43 DUE TO TIME LIMIT ***
[0;31m[2024-01-29T23:05:28.446, 41000, 41003, Error] at
fileconnection.cpp:340 in refill;
REASON='JASSERT(jalib::Filesystem::FileExists(_path)) failed'
_path = /tmp/.libxsmm.74748
Message: File not found.
cp2k.psmp: Terminating...
Backtrace:
1 _ZN16jassert_internal7JAssertD2Ev in
/usr/local/lib/dmtcp/libdmtcp.so 0x7fe4f18738c4
2 _ZN5dmtcp14FileConnection6refillEb in
/usr/local/lib/dmtcp/libdmtcp_ipc.so 0x7fe4f1911c4e
3 _ZN5dmtcp14ConnectionList6refillEb in
/usr/local/lib/dmtcp/libdmtcp_ipc.so 0x7fe4f190377a
4 _Z28dmtcp_FileConnList_EventHook11eDmtcpEventP17_DmtcpEventData_t
in /usr/local/lib/dmtcp/libdmtcp_ipc.so 0x7fe4f191ea52
5
_ZN5dmtcp13PluginManager9eventHookE11eDmtcpEventP17_DmtcpEventData_t in
/usr/local/lib/dmtcp/libdmtcp.so 0x7fe4f183e45a
6 _ZN5dmtcp11DmtcpWorker11postRestartEd in
/usr/local/lib/dmtcp/libdmtcp.so 0x7fe4f1833568
7 _ZN5dmtcp10ThreadList18waitForAllRestoredEP6Thread in
/usr/local/lib/dmtcp/libdmtcp.so 0x7fe4f1844a7d
8 in /usr/local/lib/dmtcp/libdmtcp.so 0x7fe4f18462e7
9 in /usr/local/lib/dmtcp/libdmtcp.so 0x7fe4f18488de
10 in /lib/x86_64-linux-gnu/libc.so.6 0x7fe4ecc6cb43
11 in /lib/x86_64-linux-gnu/libc.so.6 0x7fe4eccfea00
[0m
--
Madan K Sharma Timalsina, PhD
NESAP Fellow (NERSC)
-------------------------------------------------------
Lawrence Berkeley National Laboratory
1 Cyclotron Road
Mail Stop: 59R4010A
Berkeley, CA 94720 US
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