I am running the command line as an external process.

I solved it by adding saxon.jar from the oXygen installation directory to
the classpath as you suggested,and in addition rearranging all the jar
files in the classpath to the following:

* dir containing CatalogManager.properties, resolver.jar,
CatalogManager.properties
* log4j.jar, oxygen.jar, xercesImpl.jar (from oXygen)
* saxon-xml-apis.jar, xt.jar, crimson.jar (from XEP)
* saxon65.jar (from DocBook extensions)
* saxon.jar (from oXygen)

Thanks for guiding me to a solution! :)

Bergfrid Skaara



On Wed, May 7, 2014 at 3:26 PM, Radu Coravu <[email protected]> wrote:

> Hi Bergfrid,
>
> I'm not sure what the problem is, are you running the command line as an
> external process or from an ANT build file?
>
> You could try to add the oxygen.jar as the first entry in the classpath
> (we also have some Saxon 6 patches) and use the "saxon.jar" from the Oxygen
> installation folder.
>
>
> Regards,
> Radu
>
> Radu Coravu
> <oXygen/>  XML Editor, Schema Editor and XSLT Editor/Debugger
> http://www.oxygenxml.com
>
> On 5/7/2014 3:39 PM, Bergfrid Skaara wrote:
>
>> Here is the stack trace:
>>
>> Exception in thread "main" java.lang.NoSuchFieldError: catalogEntries
>>          at org.apache.xml.resolver.Resolver.resolveURI(Resolver.
>> java:163)
>>          at
>> org.apache.xml.resolver.Catalog.resolveSubordinateCatalogs(Unknown
>> Source)
>>          at org.apache.xml.resolver.Catalog.resolveURI(Unknown Source)
>>          at org.apache.xml.resolver.Resolver.resolveURI(Resolver.
>> java:158)
>>          at
>> org.apache.xml.resolver.Catalog.resolveSubordinateCatalogs(Unknown
>> Source)
>>          at org.apache.xml.resolver.Catalog.resolveURI(Unknown Source)
>>          at org.apache.xml.resolver.Resolver.resolveURI(Resolver.
>> java:158)
>>          at
>> org.apache.xml.resolver.Catalog.resolveSubordinateCatalogs(Unknown
>> Source)
>>          at org.apache.xml.resolver.Catalog.resolveURI(Unknown Source)
>>          at org.apache.xml.resolver.Resolver.resolveURI(Resolver.
>> java:158)
>>          at
>> org.apache.xml.resolver.tools.CatalogResolverXerces.resolve(Unknown
>> Source)
>>          at com.icl.saxon.StyleSheet.doMain(StyleSheet.java:250)
>>          at com.icl.saxon.StyleSheet.main(StyleSheet.java:47)
>>
>> This was triggered by adding oxygen.jar and log4j.jar to the classpath.
>> The java saxon/xerces command is unchanged.
>>
>>
>> On Wed, May 7, 2014 at 2:30 PM, Radu Coravu <[email protected]
>> <mailto:[email protected]>> wrote:
>>
>>     Hi Bergfrid,
>>
>>     Please try to post the entire stack trace of the received
>>     NoSuchFieldError.
>>
>>
>>     Regards,
>>     Radu
>>
>>     Radu Coravu
>>     <oXygen/>  XML Editor, Schema Editor and XSLT Editor/Debugger
>>     http://www.oxygenxml.com
>>
>>     On 5/7/2014 2:45 PM, Bergfrid Skaara wrote:
>>
>>         Yes to all of the above, you got my setup correct.
>>
>>         I already had xercesImpl.jar from the "OXYGEN_INSTALL_DIR" in my
>>         classpath. When I added oxygen.jar before it, it complained about
>>         missing log4j, so I added that jar as well. Now it complains about
>>         NoSuchFieldError: catalogEntrries
>>
>>         The command did resolve catalogs just finge before I added
>>         oxygen.jar
>>         Are there any other dependencies for oxygen.jar that I should
>>         add, or
>>         internal order that I need to tweak?
>>
>>         I have the following in my classpath, in the order given:
>>         * saxon.jar (from XEP)
>>         * saxon65.jar (from docbook distribution extension dir)
>>         * log4.jar (from oxygen)
>>         * oxygen.jar
>>         * xercesImpl.jar (from oxygen)
>>         * resolver.jar (from oxygen)
>>         * CatalogManager.properties (from oxygen, edited to add custom
>>         catalogs)
>>         * path to directory holding all of the above
>>         * saxon-xml-apis.jar (from XEP)
>>         * xt.jar (from XEP)
>>         * crimson.jar (from XEP)
>>
>>
>>
>>
>>         On Wed, May 7, 2014 at 1:12 PM, Radu Coravu <[email protected]
>>         <mailto:[email protected]>
>>         <mailto:[email protected] <mailto:[email protected]>>> wrote:
>>
>>              Hi Bergfrid,
>>
>>              So you are using Docbook 5 (Relax NG based) and have
>>         xpointers which
>>              point to a certain ID defined in the target file using
>>         xml:id, right?
>>
>>              One possibility of why this works in Oxygen would be the
>>         fact that
>>              we have several patches to the Xerces library we are using.
>>         One of
>>              them in particular was made to treat "xml:id" as an ID
>>         attribute
>>              even if it is not defined as such in the associated schema.
>> The
>>              thing is that Xerces does not understand the grammar in
>> RelaxNG
>>              schemas so it cannot determine on its own if a certain
>>         attribute is
>>              of type "ID".
>>
>>              Actually we posted a bug on the Xerces bugs list 7 years
>>         ago and
>>              it's still not fixed in their code:
>>
>>         https://issues.apache.org/____jira/browse/XERCESJ-1113
>>         <https://issues.apache.org/__jira/browse/XERCESJ-1113>
>>
>>
>>              <https://issues.apache.org/__jira/browse/XERCESJ-1113
>>         <https://issues.apache.org/jira/browse/XERCESJ-1113>>
>>
>>              One thing you could try would be to add in your class path
>>         from the
>>              "OXYGEN_INSTALL_DIR" both the "xercesImpl.jar" and the
>>         "oxygen.jar"
>>              and make sure the "oxygen.jar" is first added in the
>>         classpath (so
>>              that its Xerces patches are used).
>>
>>              Regards,
>>              Radu
>>
>>              Radu Coravu
>>              <oXygen/>  XML Editor, Schema Editor and XSLT Editor/Debugger
>>         http://www.oxygenxml.com
>>
>>
>>              On 5/7/2014 1:30 PM, Bergfrid Skaara wrote:
>>
>>                  We have a fully functional doc environment with DocBook
>>         5 and
>>                  oXygen XML
>>                  Editor, and I am trying to set up the corresponding java
>>                  commands for an
>>                  automated build system. I have combed the DocBook XSL
>>         book for
>>                  anything
>>                  related to xincludes and xpointers, but I still do not
>>         get why
>>                  it works
>>                  from oXygen and not from the command line.
>>
>>                  Error message: org.xml.sax.SAXParseException [...]
>>         Reason: XPointer
>>                  resolution unsuccessful
>>
>>                  I have the full command line shown in example  23.5
>>         "XIncludes
>>                  and XML
>>                  catalogs with Saxon and Xerces" on page 376.
>>
>>                  Specs:
>>                  Saxon 6.5.5, Xerces 2.11.0, oXygen XML Editor 15.1,
>>         DocBook xsl
>>                  1.78.1
>>                  with customization layer and custom rng schema.
>>
>>                  I use the basic xpointer attribute with fragment
>>         references to
>>                  xml:id in
>>                  the hrefed file. Because this is DB5, there is no
>>         schema in the
>>                  DOCTYPE.
>>                  But according to p46 in DocBook XML TCL, xml:id is
>>         already mapped to
>>                  type ID and "you do not have to worry about fragment
>>         references
>>                  failing
>>                  due to lack of schema". After all it does work in the
>>         oXygen
>>                  transformation, so why not on the command line with the
>>         same tools ?
>>
>>                  Rewriting all xpointers to place this in separate files
>>         is not an
>>                  option, as our source is highly modular and
>>         singlesourced with
>>                  lots of
>>                  reuse across documents.
>>
>>                  Any advice, whether solutions or further reading, are
>>         welcome.
>>
>>                  Bergfrid Skaara
>>
>>
>>
>>              --
>>
>>
>>
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