> Yes, I didn't set the ATLAS_DIR but I'm happy now with > atlas3-base-dev. > > I generally don't like setting FOO_DIRS (PETSc included ;-). > > Sure, but I just want to make sure that building dolfin on top of Debian packages works. As both petsc-dev and libsuitesparse-dev are equally happy with atlas3-base and atlas3-sse2 (or some others, for that matter), it would be good if it worked. But I think that all is OK in that aspect, and that setting ATLAS_DIR would have solved your problem.
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