Johannes Ring wrote:
> On Fri, September 19, 2008 10:19, Niclas Jansson wrote:
>> Johannes Ring wrote:
>>> On Thu, September 18, 2008 19:43, Anders Logg wrote:
>>>> On Thu, Sep 18, 2008 at 06:52:30PM +0200, Johannes Ring wrote:
>>>>> On Thu, September 18, 2008 18:35, Anders Logg wrote:
>>>>>> We need to add a test/pkgconfig-generator for ParMETIS.
>>>>>>
>>>>>> I can build the test program in sandbox/passembly but I need to add
>>>>>>
>>>>>> customCxxFlags=-DHAS_PARMETIS=1
>>>>>>
>>>>>> to scons when building DOLFIN and then manually add
>>>>>>
>>>>>> -lparmetis -lmetis
>>>>>>
>>>>>> when linking the demo.
>>>>>>
>>>>>> Can someone who knows the build system better add this?
>>>>> I can do that.
>>>> Thanks.
>>>>
>>>>> Do you use the libparmetis-dev package that comes with
>>>>> Ubuntu or do you build ParMETIS yourself?
>>>> I use the Ubuntu package.
>>> I have the pkg-config generator for ParMETIS ready but building DOLFIN
>>> fails with the following error message:
>>>
>>> mpic++ -o dolfin/mesh/MeshPartition.os -c -Wall -pipe -ansi -DDEBUG -g
>>> -Werror -DNDEBUG -O2 -DHAS_MPI=1 -DMPICH_IGNORE_CXX_SEEK
>>> -DPACKAGE_VERSION=\"0.8.0\" -DHAS_PETSC=1 -DHAS_SLEPC=1 -DHAS_SCOTCH=1
>>> -DHAS_UMFPACK=1 -DHAS_GTS=1 -DHAS_TRILINOS=1 -DHAS_CHOLMOD=1
>>> -DHAS_MTL4=1
>>> -DHAS_PARMETIS=1 -fPIC -I. -I/usr/local/include -I/usr/include/libxml2
>>> -I/usr/lib/petsc/bmake/linux-gnu-c-opt -I/usr/lib/petsc/include
>>> -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -Idolfin
>>> -I/home/johannr/src/slepc-2.3.3 -I/home/johannr/src/slepc-2.3.3/include
>>> -I/usr/lib/petsc/bmake/linux-gnu-c-opt -I/usr/lib/petsc/include
>>> -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -Idolfin
>>> -I/home/johannr/src/scotch_5.0/bin -I/usr/include/suitesparse
>>> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include
>>> -I/home/johannr/src/trilinos-8.0.3/local/include
>>> -I/usr/include/suitesparse -I/home/johannr/src/svn/mtl4
>>> dolfin/mesh/MeshPartition.cpp
>>> dolfin/mesh/MeshPartition.cpp: In static member function ?static void
>>> dolfin::MeshPartition::partitionGeom(dolfin::Mesh&,
>>> dolfin::MeshFunction<unsigned int>&)?:
>>> dolfin/mesh/MeshPartition.cpp:102: error: ?idxtype? was not declared in
>>> this scope
>>> dolfin/mesh/MeshPartition.cpp:102: error: ?vtxdist? was not declared in
>>> this scope
>>> dolfin/mesh/MeshPartition.cpp:102: error: expected type-specifier before
>>> ?idxtype?
>>> dolfin/mesh/MeshPartition.cpp:102: error: expected `;' before ?idxtype?
>>> dolfin/mesh/MeshPartition.cpp:103: error: expected type-specifier before
>>> ?idxtype?
>>> dolfin/mesh/MeshPartition.cpp:103: error: expected `>' before ?idxtype?
>>> dolfin/mesh/MeshPartition.cpp:103: error: expected `(' before ?idxtype?
>>> dolfin/mesh/MeshPartition.cpp:103: error: expected `)' before ?;? token
>>> dolfin/mesh/MeshPartition.cpp:117: error: expected `;' before ?gdim?
>>> dolfin/mesh/MeshPartition.cpp:118: error: ?part? was not declared in
>>> this
>>> scope
>>> dolfin/mesh/MeshPartition.cpp:118: error: expected type-specifier before
>>> ?idxtype?
>>> dolfin/mesh/MeshPartition.cpp:118: error: expected `;' before ?idxtype?
>>> dolfin/mesh/MeshPartition.cpp:119: error: ?gdim? was not declared in
>>> this
>>> scope
>>> dolfin/mesh/MeshPartition.cpp:134: error: ?ParMETIS_V3_PartGeom? was not
>>> declared in this scope
>>> dolfin/mesh/MeshPartition.cpp:143: error: type ?<type error>? argument
>>> given to ?delete?, expected pointer
>>> dolfin/mesh/MeshPartition.cpp:144: error: type ?<type error>? argument
>>> given to ?delete?, expected pointer
>>> scons: *** [dolfin/mesh/MeshPartition.os] Error 1
>>> scons: building terminated because of errors.
>>>
>>> Any ideas?
>>>
>>> Johannes
>>>
>> Seams like it doesn't find parmetis.h
>
> Yes, it seems so, but parmetis.h is located under /usr/include so it can't
> be missed. And it doesn't fail on this part of MeshPartition.cpp:
>
> #ifdef HAS_PARMETIS
> #include <parmetis.h>
> #endif
>
Should it be
extern "C"
{
#ifdef HAS_PARMETIS
#include <parmetis.h>
#endif
}
?
Garth
> Johannes
>
>> Niclas
>>
>>>> --
>>>> Anders
>>>> _______________________________________________
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>>>> http://www.fenics.org/mailman/listinfo/dolfin-dev
>>>>
>>>
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>> _______________________________________________
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>>
>
>
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