On 21 okt 2009, at 11.32, Harish Narayanan wrote:
> Aron Wahlberg wrote:
>> I just built dolfin (without parmetis, swiginac, trillinos or syfi).
>> After sourcing I ended up a missing symbol:
>>
>> Symbol not found: _camd_calloc
>>
>> The error does not make sense to me. Mabybe to sombody else?
>
> This is a problem with the pkgconfiggenerator for suitesparse when one
> builds a recent suitesparse by hand.
>
> You need to make sure the following modifications are made to the
> corresponding files:
>
> diff -r 0e4d88def193
> scons/simula-scons/simula_scons/pkgconfiggenerators/cholmod.py
> --- a/scons/simula-scons/simula_scons/pkgconfiggenerators/cholmod.py
> Mon
> Oct 19 11:41:27 2009 +0100
> +++ b/scons/simula-scons/simula_scons/pkgconfiggenerators/cholmod.py
> Wed
> Oct 21 11:31:23 2009 +0200
> @@ -225,8 +225,8 @@
> libs += "-L%s -llapack -L%s -lblas" % \
> (getLapackDir(sconsEnv=sconsEnv),
> getBlasDir(sconsEnv=sconsEnv))
> libs += " -L%s -lcholmod" % getCholmodLibDir(sconsEnv)
> - libs += " -L%s -lamd" % getAmdLibDir(sconsEnv)
> - libs += " -L%s -lcolamd" % getColamdLibDir(sconsEnv)
> + libs += " -L%s -lamd -lcamd" % getAmdLibDir(sconsEnv)
> + libs += " -L%s -lcolamd -lccolamd" % getColamdLibDir(sconsEnv)
> return libs
>
> def pkgTests(forceCompiler=None, sconsEnv=None,
> diff -r 0e4d88def193
> scons/simula-scons/simula_scons/pkgconfiggenerators/petsc.py
> --- a/scons/simula-scons/simula_scons/pkgconfiggenerators/petsc.py Mon
> Oct 19 11:41:27 2009 +0100
> +++ b/scons/simula-scons/simula_scons/pkgconfiggenerators/petsc.py Wed
> Oct 21 11:31:23 2009 +0200
> @@ -31,7 +31,7 @@
> -...@echo -I${PETSC_DIR}/%s${PETSC_ARCH}%s -I${PETSC_DIR}/include
> ${MPI_INCLUDE}
>
> get_petsc_libs:
> - -...@echo ${C_SH_LIB_PATH} -L${PETSC_LIB_DIR} ${PETSC_LIB_BASIC}
> + -...@echo ${C_SH_LIB_PATH} -L${PETSC_LIB_DIR} ${PETSC_LIB_BASIC} -
> lX11
> -L/usr/X11R6/lib
>
> get_petsc_cc:
> -...@echo ${PCC}
> diff -r 0e4d88def193
> scons/simula-scons/simula_scons/pkgconfiggenerators/umfpack.py
> --- a/scons/simula-scons/simula_scons/pkgconfiggenerators/umfpack.py
> Mon
> Oct 19 11:41:27 2009 +0100
> +++ b/scons/simula-scons/simula_scons/pkgconfiggenerators/umfpack.py
> Wed
> Oct 21 11:31:23 2009 +0200
> @@ -225,7 +225,7 @@
> libs += "-framework vecLib"
> else:
> libs += "-L%s -lblas" % getBlasDir(sconsEnv=sconsEnv)
> - libs += " -L%s -lumfpack" % getUmfpackLibDir(sconsEnv)
> + libs += " -L%s -lumfpack -lmetis" % getUmfpackLibDir(sconsEnv)
> if needAMD(sconsEnv):
> libs += " -L%s -lamd" % getAMDLibDir(sconsEnv)
> return libs
>
> Harish
The problem remains tough...
However, running any of the files I updated results in warnings and
"Consider setting the variable CHOLMOD_DIR" or similar for the other
files. It also tells me to update the PKG_CONFIG_PATH with the current
directory.
Where should I set these variables and to what values?
Aron
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