The CGAL pkg-config generator looks for CGAL under /usr by default. Try to run
scons configure withCgalDir=/path/to/local/cgal This should fix your first issue. Please try out the attached patch for your second issue. ** Attachment added: "cgal_branch-johannr-2009-12-04.patch" http://launchpadlibrarian.net/36441692/cgal_branch-johannr-2009-12-04.patch -- Newly added cgal detection in scons does not set needed cflags https://bugs.launchpad.net/bugs/492295 You received this bug notification because you are a member of DOLFIN Team, which is subscribed to DOLFIN. Status in DOLFIN: Confirmed Bug description: Simple run of the scons.local script detects CGAL correctly and generates a pkgconfig file, but 1. the -I includepath is not detected correctly (should be /home/andre/local/ instead of /usr/include) 2. and the cflag -frounding-math is not appended to the cflags when scons run the compilation. Relevant environment variables: export LOCALPATH=${HOME}/local export CPLUS_INCLUDE_PATH=$CPLUS_INLUDE_PATH:$LOCALPATH/include export LD_LIBRARY_PATH=$LOCALPATH/lib:${LOCALPATH}/lib/vmtk:$LD_LIBRARY_PATH export PKG_CONFIG_PATH=$LOCALPATH/lib/pkgconfig:$PKG_CONFIG_PATH:/usr/lib/pkgconfig cgal.pc: Name: cgal Version: 3.5.0 Description: Computational Geometry Algorithms Library Libs: -L/usr/lib -lCGAL -lCGAL_Core Cflags: -I/usr/include -frounding-math scons output: Fri Dec 04 13:46 an...@andre-laptop:cgal_branch 78>./scons.local scons: Reading SConscript files ... /home/andre/homebase/software/packages/src/fenics-unstable/tmp/cgal_branch/scons/simula-scons Using options from /home/andre/homebase/software/packages/src/fenics-unstable/tmp/cgal_branch/scons/options.cache Checking for pkg-config... yes Checking for boost... no (pkg-config file not found) Trying to generate pkg-config file for boost... done Found Boost and generated pkg-config file in '/home/andre/homebase/software/packages/src/fenics-unstable/tmp/cgal_branch/scons/pkgconfig' Checking for boost_filesystem... no (pkg-config file not found) Trying to generate pkg-config file for boost_filesystem... done Found Boost.Filesystem and generated pkg-config file in '/home/andre/homebase/software/packages/src/fenics-unstable/tmp/cgal_branch/scons/pkgconfig' Checking for boost_program_options... no (pkg-config file not found) Trying to generate pkg-config file for boost_program_options... done Found Boost.Program_options and generated pkg-config file in '/home/andre/homebase/software/packages/src/fenics-unstable/tmp/cgal_branch/scons/pkgconfig' Checking for cgal... no (pkg-config file not found) Trying to generate pkg-config file for cgal... done Found cgal and generated pkg-config file in '/home/andre/homebase/software/packages/src/fenics-unstable/tmp/cgal_branch/scons/pkgconfig' Checking for cholmod... no (pkg-config file not found) Trying to generate pkg-config file for cholmod... done Found CHOLMOD and generated pkg-config file in '/home/andre/homebase/software/packages/src/fenics-unstable/tmp/cgal_branch/scons/pkgconfig' Checking for gts... yes Checking for libxml-2.0... yes Checking for mtl4... no (pkg-config file not found) Trying to generate pkg-config file for mtl4... failed Checking for numpy-1... yes Checking for parmetis... no (pkg-config file not found) Trying to generate pkg-config file for parmetis... done Found ParMETIS and generated pkg-config file in '/home/andre/homebase/software/packages/src/fenics-unstable/tmp/cgal_branch/scons/pkgconfig' Checking for petsc... no (pkg-config file not found) Trying to generate pkg-config file for petsc... done Found PETSc and generated pkg-config file in '/home/andre/homebase/software/packages/src/fenics-unstable/tmp/cgal_branch/scons/pkgconfig' Checking for python-2... yes Checking for scotch... no (pkg-config file not found) Trying to generate pkg-config file for scotch... done Found SCOTCH and generated pkg-config file in '/home/andre/homebase/software/packages/src/fenics-unstable/tmp/cgal_branch/scons/pkgconfig' Checking for slepc... no (pkg-config file not found) Trying to generate pkg-config file for slepc... done Found SLEPc and generated pkg-config file in '/home/andre/homebase/software/packages/src/fenics-unstable/tmp/cgal_branch/scons/pkgconfig' Checking for trilinos... no (pkg-config file not found) Trying to generate pkg-config file for trilinos... failed Checking for ufc-1... yes Checking for umfpack... no (pkg-config file not found) Trying to generate pkg-config file for umfpack... done Found UMFPACK and generated pkg-config file in '/home/andre/homebase/software/packages/src/fenics-unstable/tmp/cgal_branch/scons/pkgconfig' Checking for zlib... no (pkg-config file not found) Trying to generate pkg-config file for zlib... done Found zlib and generated pkg-config file in '/home/andre/homebase/software/packages/src/fenics-unstable/tmp/cgal_branch/scons/pkgconfig' Resolving compiler... done Found optional package: cgal (version 3.5) Found optional package: umfpack (version 5.2.0) Found optional package: cholmod (version 1.6.0) Found optional package: parmetis (version 3.1) Found optional package: slepc (version 3.0.0) Found optional package: zlib (version 1.2.3) Found optional package: petsc (version 3.0.0) Found optional package: gts (version 0.7) Found optional package: scotch (version 5.0) Unable to find optional package: trilinos (version 7.0.0) Unable to find optional package: mtl4 (version 4) Enabling compilation of Python wrappers --------------------------------------------------------- Configuration of DOLFIN finished. Now run scons to build DOLFIN. To see available configure options, run scons configure --help or -h For a list of general SCons options, run scons --help-options or -H --------------------------------------------------------- scons: Reading SConscript files ... /home/andre/homebase/software/packages/src/fenics-unstable/tmp/cgal_branch/scons/simula-scons scons: done reading SConscript files. scons: Building targets ... mpic++ -o dolfin/ale/TransfiniteInterpolation.os -c -Wall -pipe -ansi -BOOST_UBLAS_NDEBUG -DDEBUG -g -O2 -Werror -DHAS_MPI=1 -DMPICH_IGNORE_CXX_SEEK -DPACKAGE_VERSION=\"0.9.4\" -DHAS_CGAL=1 -DHAS_UMFPACK=1 -DHAS_CHOLMOD=1 -DHAS_PARMETIS=1 -DHAS_SLEPC=1 -DHAS_ZLIB=1 -DHAS_PETSC=1 -DHAS_GTS=1 -DHAS_SCOTCH=1 -fno-strict-aliasing -fPIC -I. -I/home/andre/local/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 -I/usr/include -I/usr/include/suitesparse -I/usr/include/suitesparse -I/usr/include -I/home/andre/local -I/home/andre/local/include -I/home/andre/local/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include -I/home/andre/local/include -I/home/andre/local/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/scotch dolfin/ale/TransfiniteInterpolation.cpp mpic++ -o dolfin/ale/HarmonicSmoothing.os -c -Wall -pipe -ansi -BOOST_UBLAS_NDEBUG -DDEBUG -g -O2 -Werror -DHAS_MPI=1 -DMPICH_IGNORE_CXX_SEEK -DPACKAGE_VERSION=\"0.9.4\" -DHAS_CGAL=1 -DHAS_UMFPACK=1 -DHAS_CHOLMOD=1 -DHAS_PARMETIS=1 -DHAS_SLEPC=1 -DHAS_ZLIB=1 -DHAS_PETSC=1 -DHAS_GTS=1 -DHAS_SCOTCH=1 -fno-strict-aliasing -fPIC -I. -I/home/andre/local/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 -I/usr/include -I/usr/include/suitesparse -I/usr/include/suitesparse -I/usr/include -I/home/andre/local -I/home/andre/local/include -I/home/andre/local/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include -I/home/andre/local/include -I/home/andre/local/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/scotch dolfin/ale/HarmonicSmoothing.cpp mpic++ -o dolfin/ale/ALE.os -c -Wall -pipe -ansi -BOOST_UBLAS_NDEBUG -DDEBUG -g -O2 -Werror -DHAS_MPI=1 -DMPICH_IGNORE_CXX_SEEK -DPACKAGE_VERSION=\"0.9.4\" -DHAS_CGAL=1 -DHAS_UMFPACK=1 -DHAS_CHOLMOD=1 -DHAS_PARMETIS=1 -DHAS_SLEPC=1 -DHAS_ZLIB=1 -DHAS_PETSC=1 -DHAS_GTS=1 -DHAS_SCOTCH=1 -fno-strict-aliasing -fPIC -I. -I/home/andre/local/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 -I/usr/include -I/usr/include/suitesparse -I/usr/include/suitesparse -I/usr/include -I/home/andre/local -I/home/andre/local/include -I/home/andre/local/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include -I/home/andre/local/include -I/home/andre/local/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/scotch dolfin/ale/ALE.cpp _______________________________________________ Mailing list: https://launchpad.net/~dolfin Post to : [email protected] Unsubscribe : https://launchpad.net/~dolfin More help : https://help.launchpad.net/ListHelp
