On Thu, Apr 15, 2010 at 6:53 PM, Riesen Patrick <[email protected]> wrote: > hi, > > ldd on libdolfin.so gives > > > linux-vdso.so.1 => (0x00007fffe6cd6000) > libboost_program_options.so.1.40.0 => > /scratch/priesen/FEniCS/build/lib/libboost_program_options.so.1.40.0 > (0x00007f2b6926d000) > libboost_filesystem.so.1.40.0 => > /scratch/priesen/FEniCS/build/lib/libboost_filesystem.so.1.40.0 > (0x00007f2b69059000) > libxml2.so.2 => /usr/lib/libxml2.so.2 (0x00007f2b68ccb000) > liblapack.so.3gf => /usr/lib/atlas/liblapack.so.3gf > (0x00007f2b681de000) > libblas.so.3gf => /usr/lib/atlas/libblas.so.3gf (0x00007f2b67821000) > libz.so.1 => /usr/lib/libz.so.1 (0x00007f2b6760a000) > [....] > > so the boost shared libs are loaded, but there's another boost lib as > > libboost_thread-gcc42-mt-1_34_1.so.1.34.1 => > /usr/lib/libboost_thread-gcc42-mt-1_34_1.so.1.34.1 (0x00007ff99fc0d000)
I think it is CGAL that links to that library. Try to rebuild CGAL with these two options: -D Boost_INCLUDE_DIR:PATH=/scratch/priesen/FEniCS/build/include -D Boost_LIBRARY_DIRS:FILEPATH=/scratch/priesen/FEniCS/build/lib Johannes > this is suspicious, since it does not belong to the actual boost1.4.0 i have > in my FEniCS/build dir > don't know how it found this... i have set the BOOST_DIR variable correctly > to .../FEniCS/build. > hm.... > > > > > -----Original Message----- > From: Andy Ray Terrel [mailto:[email protected]] > Sent: Thu 15.04.2010 16:26 > To: Riesen Patrick > Cc: DOLFIN Mailing List > Subject: Re: [Dolfin] linking error > > Can you do ldd (otool -L on Mac) on the object file to see if boost's > shared library is being loaded. It looks like either an older version > of boost or a problem finding the shared library. > > ater...@aterrel:~/workspace/dolfin/demo/pde/stokes/taylor-hood/cpp$ > otool -L ~/workspace/lib/libdolfin.dylib > /Users/aterrel/workspace/lib/libdolfin.dylib: > dolfin/libdolfin.dylib (compatibility version 0.0.0, current version > 0.0.0) > /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib > (compatibility version 1.0.0, current version 268.0.1) > /sw/lib/libboost_program_options-1_35.dylib (compatibility version > 1.35.0, current version 1.35.0) > /sw/lib/libboost_filesystem-1_35.dylib (compatibility version 1.35.0, > current version 1.35.0) > /sw/lib/libboost_system-1_35.dylib (compatibility version 1.35.0, > current version 1.35.0) > /sw/lib/libxml2.2.dylib (compatibility version 9.0.0, current version > 9.32.0) > /usr/lib/libz.1.dylib (compatibility version 1.0.0, current version > 1.2.3) > /usr/local/lib/libmpi_cxx.0.dylib (compatibility version 1.0.0, > current version 1.0.0) > /usr/local/lib/libmpi.0.dylib (compatibility version 1.0.0, current > version 1.1.0) > /usr/local/lib/libopen-rte.0.dylib (compatibility version 1.0.0, > current version 1.0.0) > /usr/local/lib/libopen-pal.0.dylib (compatibility version 1.0.0, > current version 1.0.0) > /usr/lib/libutil.dylib (compatibility version 1.0.0, current version > 1.0.0) > /usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current > version 7.9.0) > /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current > version 125.0.1) > > > -- Andy > > On Thu, Apr 15, 2010 at 8:57 AM, Patrick Riesen <[email protected]> > wrote: >> hello, i just made a bzr pull for all fenics packages. >> >> dolfin compiled and linked without problem. but when compiling any of the >> demos i get the following linking error: >> >> mpic++ -o demo -Wl,-rpath,/scratch/priesen/FEniCS/build/lib main.o >> -L/scratch/priesen/FEniCS/build/lib -L/usr/lib/atlas -ldolfin >> -lboost_program_options -lboost_filesystem -lxml2 -lz -lumfpack -lamd >> -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc >> -lX11 -lCGAL -llapack -lblas >> /scratch/priesen/FEniCS/build/lib/libdolfin.so: undefined reference to >> `boost::detail::set_tss_data(void const*, >> boost::shared_ptr<boost::detail::tss_cleanup_function>, void*, bool)' >> /scratch/priesen/FEniCS/build/lib/libdolfin.so: undefined reference to >> `boost::detail::get_tss_data(void const*)' >> collect2: ld returned 1 exit status >> scons: *** [demo] Error 1 >> scons: building terminated because of errors. >> >> >> help appreciated :-) >> >> best regards, >> >> patrick >> >> _______________________________________________ >> Mailing list: https://launchpad.net/~dolfin >> Post to : [email protected] >> Unsubscribe : https://launchpad.net/~dolfin >> More help : https://help.launchpad.net/ListHelp >> > > > _______________________________________________ > Mailing list: https://launchpad.net/~dolfin > Post to : [email protected] > Unsubscribe : https://launchpad.net/~dolfin > More help : https://help.launchpad.net/ListHelp > _______________________________________________ Mailing list: https://launchpad.net/~dolfin Post to : [email protected] Unsubscribe : https://launchpad.net/~dolfin More help : https://help.launchpad.net/ListHelp
