On Wed, Nov 16, 2011 at 10:59 PM, Anders Logg <l...@simula.no> wrote: > The Oneiric buildbot is timing out. It has happened at least twice > today. Johannes, can you check if it is really stalling on the > Cahn-Hilliard demo in parallel or if it's just slow?
No, it is stalling, probably because of the known OpenMPI bug on Oneiric. I thought I had disabled parallel testing on this buildbot, but I must have accidentally enabled it again recently. I have disabled it again now. BTW, the OS X buildbot is stalling on the C++ eigenvalue demo. When I run this demo manually on the buildbot I get the error below. Any ideas? Johannes buildbot@buildbotmac:cpp$ mpirun -np 3 ./demo_eigenvalue Small graph Process 0: Partitioned mesh, edge cut is 69. Process 2: Partitioned mesh, edge cut is 69. Process 1: Partitioned mesh, edge cut is 69. Largest eigenvalue: 10.0279 [1]PETSC ERROR: --------------------- Error Message ------------------------------------ [1]PETSC ERROR: Invalid argument! [1]PETSC ERROR: Vector is not ghosted! [1]PETSC ERROR: Largest eigenvalue: 10.0279 Process 0: Plotting u (a function). Process 0: *** Warning: Plotting disabled when running in parallel; see https://bugs.launchpad.net/dolfin/+bug/427534 [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Invalid argument! [0]PETSC ERROR: Vector is not ghosted! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Release Version 3.1.0, Patch 8, Thu Mar 17 13:37:48 CDT 2011 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Unknown Name on a darwin10. named buildbotmac.simula.no by buildbot Thu Nov 17 07:25:27 2011 [0]PETSC ERROR: Libraries linked from /Users/buildbot/buildbots/main/local/lib [0]PETSC ERROR: Configure run at Thu Oct 13 10:31:00 2011 [0]PETSC ERROR: Configure options COPTFLAGS=-O2 --prefix=/Users/buildbot/buildbots/main/local --with-debugging=0 --with-shared=1 --with-clanguage=cxx --with-fc=0 --with-parmetis=1 --with-parmetis-dir=/Users/buildbot/buildbots/main/local --download-umfpack=1 --download-spooles=1 --prefix=/Users/buildbot/buildbots/main/local [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: VecGhostUpdateBegin() line 453 in src/vec/vec/impls/mpi/pbvec.c [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Invalid argument! [0]PETSC ERROR: Vector is not ghosted! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Release Version 3.1.0, Patch 8, Thu Mar 17 13:37:48 CDT 2011 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Unknown Name on a darwin10. named buildbotmac.simula.no by buildbot Thu NoLargest eigenvalue: 10.0279 Process 2: Plotting u (a function). Process 2: *** Warning: Plotting disabled when running in parallel; see https://bugs.launchpad.net/dolfin/+bug/427534 ------------------------------------------------------------------------ [1]PETSC ERROR: Petsc Release Version 3.1.0, Patch 8, Thu Mar 17 13:37:48 CDT 2011 [1]PETSC ERROR: See docs/changes/index.html for recent updates. [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [1]PETSC ERROR: See docs/index.html for manual pages. [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Unknown Name on a darwin10. named buildbotmac.simula.no by buildbot Thu Nov 17 07:25:27 2011 [1]PETSC ERROR: Libraries linked from /Users/buildbot/buildbots/main/local/lib [1]PETSC ERROR: Configure run at Thu Oct 13 10:31:00 2011 [1]PETSC ERROR: Configure options COPTFLAGS=-O2 --prefix=/Users/buildbot/buildbots/main/local --with-debugging=0 --with-shared=1 --with-clanguage=cxx --with-fc=0 --with-parmetis=1 --with-parmetis-dir=/Users/buildbot/buildbots/main/local --download-umfpack=1 --download-spooles=1 --prefix=/Users/buildbot/buildbots/main/local [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: VecGhostUpdateBegin() line 453 in src/vec/vec/impls/mpi/pbvec.c [1]PETSC ERROR: --------------------- Error Message ------------------------------------ [1]PETSC ERROR: Invalid argument! [1]PETSC ERROR: Vector is not ghosted! [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Petsc Release Version 3.1.0, Patch 8, Thu Mar 17 13:37:48 CDT 2011 [1]PETSC ERROR: See docs/changes/index.html for recent updates. [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [1]PETSC ERROR: See docs/index.html for manual pages. [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Unknown Name on a darwin10. named buildbotmac.simula.no by buildbot Thu Nov 17 07:25:27 2011 [1]PETSC ERROR: Libraries linked from /Users/buildbot/buildbots/main/local/lib [1]PETSC ERROR: Configure run at Thu Oct 13 10:31:00 2011 [1]PETSC ERROR: Config[2]PETSC ERROR: --------------------- Error Message ------------------------------------ [2]PETSC ERROR: Invalid argument! [2]PETSC ERROR: Vector is not ghosted! [2]PETSC ERROR: ------------------------------------------------------------------------ [2]PETSC ERROR: Petsc Release Version 3.1.0, Patch 8, Thu Mar 17 13:37:48 CDT 2011 [2]PETSC ERROR: See docs/changes/index.html for recent updates. [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [2]PETSC ERROR: See docs/index.html for manual pages. [2]PETSC ERROR: ------------------------------------------------------------------------ [2]PETSC ERROR: Unknown Name on a darwin10. named buildbotmac.simula.no by buildbot Thu Nov 17 07:25:27 2011 [2]PETSC ERROR: Libraries linked from /Users/buildbot/buildbots/main/local/lib [2]PETSC ERROR: Configure run at Thu Oct 13 10:31:00 2011 [2]PETSC ERROR: Configure options COPTFLAGS=-O2 --prefix=/Users/buildbot/buildbots/main/local --with-debugging=0 --with-shared=1 --with-clanguage=cxx --with-fc=0 --with-parmetis=1 --with-parmetis-dir=/Users/buildbot/buildbots/main/local --download-umfpack=1 --download-spooles=1 --prefix=/Users/buildbot/buildbots/main/local [2]PETSC ERROR: ------------------------------------------------------------------------ [2]PETSC ERROR: VecGhostUpdateBegin() line 453 in src/vec/vec/impls/mpi/pbvec.c [2]PETSC ERROR: --------------------- Error Message ------------------------------------ [2]PETSC ERROR: Invalid argument! [2]PETSC ERROR: Vector is not ghosted! [2]PETSC ERROR: ------------------------------------------------------------------------ [2]PETSC ERROR: Petsc Release Version 3.1.0, Patch 8, Thu Mar 17 13:37:48 CDT 2011 [2]PETSC ERROR: See docs/changes/index.html for recent updates. [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [2]PETSC ERROR: See docs/index.html for manual pages. [2]PETSC ERROR: ------------------------------------------------------------------------ [2]PETSC ERROR: Unknown Name on a darwin10. named buildbotmac.simula.no by buildbot Thu Nov 17 07:25:27 2011 [0]PETSC ERROR: Libraries linked from /Users/buildbot/buildbots/main/local/lib [0]PETSC ERROR: Configure run at Thu Oct 13 10:31:00 2011 [0]PETSC ERROR: Configure options COPTFLAGS=-O2 --prefix=/Users/buildbot/buildbots/main/local --with-debugging=0 --with-shared=1 --with-clanguage=cxx --with-fc=0 --with-parmetis=1 --with-parmetis-dir=/Users/buildbot/buildbots/main/local --download-umfpack=1 --download-spooles=1 --prefix=/Users/buildbot/buildbots/main/local [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: VecGhostUpdateEnd() line 515 in src/vec/vec/impls/mpi/pbvec.c ure options COPTFLAGS=-O2 --prefix=/Users/buildbot/buildbots/main/local --with-debugging=0 --with-shared=1 --with-clanguage=cxx --with-fc=0 --with-parmetis=1 --with-parmetis-dir=/Users/buildbot/buildbots/main/local --download-umfpack=1 --download-spooles=1 --prefix=/Users/buildbot/buildbots/main/local [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: VecGhostUpdateEnd() line 515 in src/vec/vec/impls/mpi/pbvec.c [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [1]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [1]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [1]PETSC ERROR: to get more information on the crash. [1]PETSC ERROR: --------------------- Error Message ------------------------------------ [1]PETSC ERROR: Signal received! [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Petsc Release Version 3.1.0, Patch 8, Thu Mar 17 13:37:48 CDT 2011 [1]PETSC ERROR: See docs/changes/index.html for recent updates. [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [1]PETSC ERROR: See docs/index.html for manual pages. [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Unknown Name on a darwin10. named buildbotmac.simula.no by buildbot Thu Nov 17 07:25:27 2011 [1]PETSC ERROR: Libraries linked from /Users/buildbot/buildbots/main/local/lib [1]PETSC ERROR: Configure run at Thu Oct 13 10:31:00 2011 [1]PETSC ERROR: Configure options COPTFLAGS=-O2 --prefix=/Users/buildbot/buildbots/main/local --with-debugging=0 --with-shared=1 --with-clanguage=cxxv 17 07:25:27 2011 [2]PETSC ERROR: Libraries linked from /Users/buildbot/buildbots/main/local/lib [2]PETSC ERROR: Configure run at Thu Oct 13 10:31:00 2011 [2]PETSC ERROR: Configure options COPTFLAGS=-O2 --prefix=/Users/buildbot/buildbots/main/local --with-debugging=0 --with-shared=1 --with-clanguage=cxx --with-fc=0 --with-parmetis=1 --with-parmetis-dir=/Users/buildbot/buildbots/main/local --download-umfpack=1 --download-spooles=1 --prefix=/Users/buildbot/buildbots/main/local [2]PETSC ERROR: ------------------------------------------------------------------------ [2]PETSC ERROR: VecGhostUpdateEnd() line 515 in src/vec/vec/impls/mpi/pbvec.c --with-fc=0 --with-parmetis=1 --with-parmetis-dir=/Users/buildbot/buildbots/main/local --download-umfpack=1 --download-spooles=1 --prefix=/Users/buildbot/buildbots/main/local [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [buildbotmac.simula.no:88290] MPI_ABORT invoked on rank 1 in communicator MPI_COMM_WORLD with errorcode 59 _______________________________________________ Mailing list: https://launchpad.net/~dolfin Post to : dolfin@lists.launchpad.net Unsubscribe : https://launchpad.net/~dolfin More help : https://help.launchpad.net/ListHelp
