Den 21. aug. 2010 kl. 12.11 skrev Harish Narayanan:
> On 8/21/10 1:54 PM, Garth N. Wells wrote:
>> On Aug 21 2010, Anders Logg wrote:
>>
>>> Armadillo worked for me last time I checked (before adding Trilinos).
>>>
>>> Garth mentioned something about the mpfr problem but I didn't
>>> understand what the solution was.
>>>
>>
>>
>> The solution is straightforward: install mpfr.
>
> I had mpfr installed via MacPorts.
>
Same applies for me. mpfr is installed and was recognized before.
Error messages starts with
Undefined symbols:
"_mpfr_init2", referenced from:
and I leave out the 10 pages of template related error messages which follows
afterwards.
Error messages appears after executing
cd /Users/andre/Work/software/src/FEniCS/tmp/dolfin/dorsal_build_dir/dolfin &&
/opt/local/bin/cmake -E cmake_link_script CMakeFiles/dolfin.dir/link.txt
--verbose=1
during the run of cmake.
Strangely the mpfr related error disappears if I add
/opt/local/lib/libmpfr.dylib *directly* to the link.txt, although it is already
linked to the libCGAL.dylib.
Maybe libCGAL.dylib can not load libmpfr.dylib when linked under cmake, some
missing paths?
If I added libmpfr.dylib it runs further but stops now with:
Undefined symbols:
"operator<<(std::basic_ostream<char, std::char_traits<char> >&, __mpf_struct
const*)", referenced from:
dolfin::PythonFile::operator<<(std::tr1::tuple<unsigned int,
__gmp_expr<__mpf_struct [1], __mpf_struct [1]>, __gmp_expr<__mpf_struct [1],
__mpf_struct [1]>*, std::tr1::_NullClass, std::tr1::_NullClass,
std::tr1::_NullClass, std::tr1::_NullClass, std::tr1::_NullClass,
std::tr1::_NullClass, std::tr1::_NullClass> const&)in PythonFile.cpp.o
dolfin::PythonFile::operator<<(std::tr1::tuple<unsigned int,
__gmp_expr<__mpf_struct [1], __mpf_struct [1]>, __gmp_expr<__mpf_struct [1],
__mpf_struct [1]>*, std::tr1::_NullClass, std::tr1::_NullClass,
std::tr1::_NullClass, std::tr1::_NullClass, std::tr1::_NullClass,
std::tr1::_NullClass, std::tr1::_NullClass> const&)in PythonFile.cpp.o
dolfin::PythonFile::operator<<(dolfin::Sample const&)in PythonFile.cpp.o
dolfin::PythonFile::operator<<(dolfin::Sample const&)in PythonFile.cpp.o
dolfin::PythonFile::operator<<(dolfin::Sample const&)in PythonFile.cpp.o
dolfin::PythonFile::operator<<(dolfin::Sample const&)in PythonFile.cpp.o
dolfin::cGqMethod::str(bool) constin cGqMethod.cpp.o
dolfin::cGqMethod::str(bool) constin cGqMethod.cpp.o
dolfin::dGqMethod::str(bool) constin dGqMethod.cpp.o
dolfin::dGqMethod::str(bool) constin dGqMethod.cpp.o
dolfin::MonoAdaptiveTimeSlab::str(bool) constin MonoAdaptiveTimeSlab.cpp.o
dolfin::MonoAdaptiveTimeSlab::str(bool) constin MonoAdaptiveTimeSlab.cpp.o
dolfin::ODESolution::save_to_file() in ODESolution.cpp.o
dolfin::ODESolution::save_to_file() in ODESolution.cpp.o
dolfin::ODESolution::save_to_file() in ODESolution.cpp.o
dolfin::ODESolution::save_to_file() in ODESolution.cpp.o
dolfin::ODESolution::save_to_file() in ODESolution.cpp.o
dolfin::ODESolution::str(bool) constin ODESolution.cpp.o
dolfin::ODESolution::str(bool) constin ODESolution.cpp.o
dolfin::ODESolution::str(bool) constin ODESolution.cpp.o
dolfin::TimeSlab::write(unsigned int, __gmp_expr<__mpf_struct [1],
__mpf_struct [1]> const*)in TimeSlab.cpp.o
dolfin::RealParameter::value_str() constin Parameter.cpp.o
dolfin::RealParameter::str() constin Parameter.cpp.o
dolfin::RealParameter::range_str() constin Parameter.cpp.o
dolfin::RealParameter::range_str() constin Parameter.cpp.o
"boost::detail::get_tss_data(void const*)", referenced from:
CGAL::Lazy<CGAL::Plane_3<CGAL::Simple_cartesian<CGAL::Interval_nt<false>
> >, CGAL::Plane_3<CGAL::Simple_cartesian<CGAL::Gmpq> >, CGAL::Gmpq,
CGAL::Cartesian_converter<CGAL::Simple_cartesian<CGAL::Gmpq>,
CGAL::Simple_cartesian<CGAL::Interval_nt<false> >,
CGAL::NT_converter<CGAL::Gmpq, CGAL::Interval_nt<false> > > >::zero()in
BarycenterQuadrature.cpp.o
CGAL::Lazy<CGAL::Plane_3<CGAL::Simple_cartesian<CGAL::Interval_nt<false>
> >, CGAL::Plane_3<CGAL::Simple_cartesian<CGAL::Gmpq> >, CGAL::Gmpq,
CGAL::Cartesian_converter<CGAL::Simple_cartesian<CGAL::Gmpq>,
CGAL::Simple_cartesian<CGAL::Interval_nt<false> >,
CGAL::NT_converter<CGAL::Gmpq, CGAL::Interval_nt<false> > > >::zero()in
BarycenterQuadrature.cpp.o
CGAL::Lazy<CGAL::Plane_3<CGAL::Simple_cartesian<CGAL::Interval_nt<false>
> >, CGAL::Plane_3<CGAL::Simple_cartesian<CGAL::Gmpq> >, CGAL::Gmpq,
CGAL::Cartesian_converter<CGAL::Simple_cartesian<CGAL::Gmpq>,
CGAL::Simple_cartesian<CGAL::Interval_nt<false> >,
CGAL::NT_converter<CGAL::Gmpq, CGAL::Interval_nt<false> > > >::zero()in
BarycenterQuadrature.cpp.o
CGAL::Lazy<CGAL::Point_3<CGAL::Simple_cartesian<CGAL::Interval_nt<false>
> >, CGAL::Point_3<CGAL::Simple_cartesian<CGAL::Gmpq> >, CGAL::Gmpq,
CGAL::Cartesian_converter<CGAL::Simple_cartesian<CGAL::Gmpq>,
CGAL::Simple_cartesian<CGAL::Interval_nt<false> >,
CGAL::NT_converter<CGAL::Gmpq, CGAL::Interval_nt<false> > > >::zero()in
BarycenterQuadrature.cpp.o
CGAL::Lazy<CGAL::Point_3<CGAL::Simple_cartesian<CGAL::Interval_nt<false>
> >, CGAL::Point_3<CGAL::Simple_cartesian<CGAL::Gmpq> >, CGAL::Gmpq,
CGAL::Cartesian_converter<CGAL::Simple_cartesian<CGAL::Gmpq>,
CGAL::Simple_cartesian<CGAL::Interval_nt<false> >,
CGAL::NT_converter<CGAL::Gmpq, CGAL::Interval_nt<false> > > >::zero()in
BarycenterQuadrature.cpp.o
CGAL::Lazy<CGAL::Point_3<CGAL::Simple_cartesian<CGAL::Interval_nt<false>
> >, CGAL::Point_3<CGAL::Simple_cartesian<CGAL::Gmpq> >, CGAL::Gmpq,
CGAL::Cartesian_converter<CGAL::Simple_cartesian<CGAL::Gmpq>,
CGAL::Simple_cartesian<CGAL::Interval_nt<false> >,
CGAL::NT_converter<CGAL::Gmpq, CGAL::Interval_nt<false> > > >::zero()in
BarycenterQuadrature.cpp.o
"operator>>(std::basic_istream<char, std::char_traits<char> >&,
__mpf_struct*)", referenced from:
dolfin::ODESolution::open_and_read_header(std::basic_ifstream<char,
std::char_traits<char> >&, unsigned int)in ODESolution.cpp.o
dolfin::ODESolution::open_and_read_header(std::basic_ifstream<char,
std::char_traits<char> >&, unsigned int)in ODESolution.cpp.o
dolfin::ODESolution::open_and_read_header(std::basic_ifstream<char,
std::char_traits<char> >&, unsigned int)in ODESolution.cpp.o
dolfin::ODESolution::read_file(unsigned int)in ODESolution.cpp.o
dolfin::ODESolution::read_file(unsigned int)in ODESolution.cpp.o
dolfin::ODESolution::read_file(unsigned int)in ODESolution.cpp.o
dolfin::ODESolution::ODESolution(std::basic_string<char,
std::char_traits<char>, std::allocator<char> >, unsigned int)in
ODESolution.cpp.o
dolfin::ODESolution::ODESolution(std::basic_string<char,
std::char_traits<char>, std::allocator<char> >, unsigned int)in
ODESolution.cpp.o
dolfin::ODESolution::ODESolution(std::basic_string<char,
std::char_traits<char>, std::allocator<char> >, unsigned int)in
ODESolution.cpp.o
Adding libgmpxx and libgmp to the link.txt also resolves the issue, now
stopping at
"boost::detail::set_tss_data(void const*,
boost::shared_ptr<boost::detail::tss_cleanup_function>, void*, bool)",
referenced from:
___tcf_8 in BarycenterQuadrature.cpp.o
___tcf_7 in BarycenterQuadrature.cpp.o
CGAL::Lazy<CGAL::Plane_3<CGAL::Simple_cartesian<CGAL::Interval_nt<false>
> >, CGAL::Plane_3<CGAL::Simple_cartesian<CGAL::Gmpq> >, CGAL::Gmpq,
CGAL::Cartesian_converter<CGAL::Simple_cartesian<CGAL::Gmpq>,
CGAL::Simple_cartesian<CGAL::Interval_nt<false> >,
CGAL::NT_converter<CGAL::Gmpq, CGAL::Interval_nt<false> > > >::zero()in
BarycenterQuadrature.cpp.o
CGAL::Lazy<CGAL::Point_3<CGAL::Simple_cartesian<CGAL::Interval_nt<false>
> >, CGAL::Point_3<CGAL::Simple_cartesian<CGAL::Gmpq> >, CGAL::Gmpq,
CGAL::Cartesian_converter<CGAL::Simple_cartesian<CGAL::Gmpq>,
CGAL::Simple_cartesian<CGAL::Interval_nt<false> >,
CGAL::NT_converter<CGAL::Gmpq, CGAL::Interval_nt<false> > > >::zero()in
BarycenterQuadrature.cpp.o
So it looks like that cmake can somehow can not load the shared libs which are
required by shared libs we are using...?
Andre
> Harish
>
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