'parallel' should be enabled for HDF5. Garth
---------- Forwarded message ---------- From: <[email protected]> Date: Sun, Oct 21, 2012 at 4:45 PM Subject: [Branch ~dorsal-core/dorsal/main] Rev 749: Add package for HDF5 To: Garth Wells <[email protected]> ------------------------------------------------------------ revno: 749 committer: Anders Logg <logg@glaurung> branch nick: dorsal timestamp: Sun 2012-10-21 08:44:12 -0700 message: Add package for HDF5 added: FEniCS/packages/hdf5.package modified: FEniCS/packages/mpfr.package FEniCS/platforms/contributed/precise-hpc.platform dorsal.sh -- lp:dorsal https://code.launchpad.net/~dorsal-core/dorsal/main Your team Dorsal is subscribed to branch lp:dorsal. To unsubscribe from this branch go to https://code.launchpad.net/~dorsal-core/dorsal/main/+edit-subscription === added file 'FEniCS/packages/hdf5.package' --- FEniCS/packages/hdf5.package 1970-01-01 00:00:00 +0000 +++ FEniCS/packages/hdf5.package 2012-10-21 15:44:12 +0000 @@ -0,0 +1,22 @@ +NAME=hdf5-1.8.9 +SOURCE=http://www.hdfgroup.org/ftp/HDF5/current/src/ +PACKING=.tar.bz2 +BUILDCHAIN=custom + +package_specific_build () { + + # Download and apply patch + if [ ! -e cmake_patch.txt ] + then + wget http://www.hdfgroup.org/ftp/HDF5/current/src/cmake_patch.txt + patch -N -Z -p0 < cmake_patch.txt + fi + + # Configure and build + mkdir -p dorsal_build_dir + cd dorsal_build_dir + cmake ${CONFOPTS} -DCMAKE_INSTALL_PREFIX=${INSTALL_PATH} .. + make ${MAKEOPTS} -j ${PROCS} + make install + +} === modified file 'FEniCS/packages/mpfr.package' --- FEniCS/packages/mpfr.package 2012-05-29 08:10:52 +0000 +++ FEniCS/packages/mpfr.package 2012-10-21 15:44:12 +0000 @@ -8,7 +8,7 @@ if [ ! -e patches ] then wget http://www.mpfr.org/mpfr-2.2.0/patches - fi + fi patch -N -Z -p1 < patches ./configure --prefix=${INSTALL_PATH} --enable-shared=yes make -j ${PROCS} === modified file 'FEniCS/platforms/contributed/precise-hpc.platform' --- FEniCS/platforms/contributed/precise-hpc.platform 2012-10-21 15:19:41 +0000 +++ FEniCS/platforms/contributed/precise-hpc.platform 2012-10-21 15:44:12 +0000 @@ -69,25 +69,28 @@ echo read -p "Press any key to continue" -#- Most important is ATLAS for BLAS (if MKL is not available) -# CHECK: added atlas.package -#- Build LAPACK to use ATLAS BLAS -# CHECK: handled as part of ATLAS build -#- Build latest OpenMPI with support for threads turned on. MPICH2 -# works fine too -# CHECK: using existing openmpi.package -#- Build Boost so that Boost.MPI uses the manually installed MPI -# CHECK: using existing boost.package, did it detect MPI??? -#- Install CGAL to use the manually installed Boost -# CHECK: using existing cgal.package -#- Build latest METIS and ParMETIS (Ubuntu ParMETIS is broken, and it -# pull in MPI) -# CHECK: using existing vtk.package -#- Build VTK (so that the Ubuntu version doesn't pull in MPI) -#- Build HDF5 with parallel suppport (so that the Ubuntu version -# doesn't pull in MPI) -#- Build SCOTCH and PaStiX with support for 64 bit integers -#- Build PETSc, SLEPc and Trilinos, linking to the above libraries. +#(x) Most important is ATLAS for BLAS (if MKL is not available) +# CHECK: added atlas.package +#(x) Build LAPACK to use ATLAS BLAS +# CHECK: handled as part of ATLAS build +#(x) Build latest OpenMPI with support for threads turned on. MPICH2 +# works fine too +# CHECK: using existing openmpi.package +#(x) Build Boost so that Boost.MPI uses the manually installed MPI +# CHECK: using existing boost.package, did it detect MPI??? +#(x) Install CGAL to use the manually installed Boost +# CHECK: using existing cgal.package +#(x) Build latest METIS and ParMETIS (Ubuntu ParMETIS is broken, and it +# pull in MPI) +# CHECK: using existing parmetis.package +#(x) Build VTK (so that the Ubuntu version doesn't pull in MPI) +# CHECK: using existing vtk.package +#(!) Build HDF5 with parallel suppport (so that the Ubuntu version +# doesn't pull in MPI) +#(x) CHECK: added hdf5.package +#(!) Build SCOTCH with support for 64 bit integers +#(!) Build PaStiX with support for 64 bit integers +#(!) Build PETSc, SLEPc and Trilinos, linking to the above libraries. # Platform specific variables default PETSC_ARCH=linux-gnu-cxx-opt === modified file 'dorsal.sh' --- dorsal.sh 2012-10-21 15:17:00 +0000 +++ dorsal.sh 2012-10-21 15:44:12 +0000 @@ -548,7 +548,7 @@ # Store timing TOC="$(($(date +%s%N)-TIC))" - TIMINGS="$TIMINGS"$"\n""$PACKAGE: "$"\t\t""$((TOC/1000000000)) s" + TIMINGS="$TIMINGS"$"\n""$PACKAGE: ""$((TOC/1000000000)) s" done
=== added file 'FEniCS/packages/hdf5.package' --- FEniCS/packages/hdf5.package 1970-01-01 00:00:00 +0000 +++ FEniCS/packages/hdf5.package 2012-10-21 15:44:12 +0000 @@ -0,0 +1,22 @@ +NAME=hdf5-1.8.9 +SOURCE=http://www.hdfgroup.org/ftp/HDF5/current/src/ +PACKING=.tar.bz2 +BUILDCHAIN=custom + +package_specific_build () { + + # Download and apply patch + if [ ! -e cmake_patch.txt ] + then + wget http://www.hdfgroup.org/ftp/HDF5/current/src/cmake_patch.txt + patch -N -Z -p0 < cmake_patch.txt + fi + + # Configure and build + mkdir -p dorsal_build_dir + cd dorsal_build_dir + cmake ${CONFOPTS} -DCMAKE_INSTALL_PREFIX=${INSTALL_PATH} .. + make ${MAKEOPTS} -j ${PROCS} + make install + +} === modified file 'FEniCS/packages/mpfr.package' --- FEniCS/packages/mpfr.package 2012-05-29 08:10:52 +0000 +++ FEniCS/packages/mpfr.package 2012-10-21 15:44:12 +0000 @@ -8,7 +8,7 @@ if [ ! -e patches ] then wget http://www.mpfr.org/mpfr-2.2.0/patches - fi + fi patch -N -Z -p1 < patches ./configure --prefix=${INSTALL_PATH} --enable-shared=yes make -j ${PROCS} === modified file 'FEniCS/platforms/contributed/precise-hpc.platform' --- FEniCS/platforms/contributed/precise-hpc.platform 2012-10-21 15:19:41 +0000 +++ FEniCS/platforms/contributed/precise-hpc.platform 2012-10-21 15:44:12 +0000 @@ -69,25 +69,28 @@ echo read -p "Press any key to continue" -#- Most important is ATLAS for BLAS (if MKL is not available) -# CHECK: added atlas.package -#- Build LAPACK to use ATLAS BLAS -# CHECK: handled as part of ATLAS build -#- Build latest OpenMPI with support for threads turned on. MPICH2 -# works fine too -# CHECK: using existing openmpi.package -#- Build Boost so that Boost.MPI uses the manually installed MPI -# CHECK: using existing boost.package, did it detect MPI??? -#- Install CGAL to use the manually installed Boost -# CHECK: using existing cgal.package -#- Build latest METIS and ParMETIS (Ubuntu ParMETIS is broken, and it -# pull in MPI) -# CHECK: using existing vtk.package -#- Build VTK (so that the Ubuntu version doesn't pull in MPI) -#- Build HDF5 with parallel suppport (so that the Ubuntu version -# doesn't pull in MPI) -#- Build SCOTCH and PaStiX with support for 64 bit integers -#- Build PETSc, SLEPc and Trilinos, linking to the above libraries. +#(x) Most important is ATLAS for BLAS (if MKL is not available) +# CHECK: added atlas.package +#(x) Build LAPACK to use ATLAS BLAS +# CHECK: handled as part of ATLAS build +#(x) Build latest OpenMPI with support for threads turned on. MPICH2 +# works fine too +# CHECK: using existing openmpi.package +#(x) Build Boost so that Boost.MPI uses the manually installed MPI +# CHECK: using existing boost.package, did it detect MPI??? +#(x) Install CGAL to use the manually installed Boost +# CHECK: using existing cgal.package +#(x) Build latest METIS and ParMETIS (Ubuntu ParMETIS is broken, and it +# pull in MPI) +# CHECK: using existing parmetis.package +#(x) Build VTK (so that the Ubuntu version doesn't pull in MPI) +# CHECK: using existing vtk.package +#(!) Build HDF5 with parallel suppport (so that the Ubuntu version +# doesn't pull in MPI) +#(x) CHECK: added hdf5.package +#(!) Build SCOTCH with support for 64 bit integers +#(!) Build PaStiX with support for 64 bit integers +#(!) Build PETSc, SLEPc and Trilinos, linking to the above libraries. # Platform specific variables default PETSC_ARCH=linux-gnu-cxx-opt === modified file 'dorsal.sh' --- dorsal.sh 2012-10-21 15:17:00 +0000 +++ dorsal.sh 2012-10-21 15:44:12 +0000 @@ -548,7 +548,7 @@ # Store timing TOC="$(($(date +%s%N)-TIC))" - TIMINGS="$TIMINGS"$"\n""$PACKAGE: "$"\t\t""$((TOC/1000000000)) s" + TIMINGS="$TIMINGS"$"\n""$PACKAGE: ""$((TOC/1000000000)) s" done
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