check files on input for viruses, and verify file format 
---------------------------------------------------------

                 Key: DS-638
                 URL: http://jira.dspace.org/jira/browse/DS-638
             Project: DSpace 1.x
          Issue Type: New Feature
          Components: JSPUI
    Affects Versions: 1.6.2
         Environment: to use this patch you will need to have ClamAV, and jhove 
installed on your system.
            Reporter: Jose Blanco
            Priority: Minor
         Attachments: java_files.zip, jhove_config_files.zip, jsp_files.zip

This patch uses JHOVE to provide rough-and-ready format checking by identifying 
that the file/bitstream extension matches  formats verifiable by JHOVE. 
(Currently DSpace accepts a deposit's file extension as gospel, so a user could 
tack a ".txt" extension onto a GIF and DSpace would assign the incorrect format 
to the file based on that incorrect extension.) 
This patch also also contains code to check the file for the presence of 
viruses.

In order to use this patch you must have jhove and ClamAV installed on your 
system. 

Important notes:

(1) HTML identification has proved unreliable ( by jhove ), so this patch does 
not return accurate results for that 
file format.
(2) This code does not fully incorporate JHOVE's validation functions; it only 
verifies that what depositors intended to submit is in fact what they submitted.

The following are returned messages when an error is detected:

Text in [brackets] is a returned value, ALLCAPS can/should be modified to 
reflect your current installation.

Questionable AIFF, GIF, JPG, PDF, TIF, WAVE, XML:

DSPACE could not verify that your file is a valid [file_format_extension]. 
Please check the file format and ".[file_format_extension]" extension.

Questionable TXT:

DSPACE found the text file you are trying to upload is neither UTF-8 nor ASCII. 
Please verify that your file is in the format you wanted.

Spaces in filenames ( this is an additional check ):

The file name contains spaces; this is not recommended. If possible, please 
replace spaces with underscores: "_".

Virus detected:

DSPACE detected a virus in this file. Please repair it and resume the deposit. 
If you need assistance, please contact us: EMAIL_ADDRESS.

To get the patch working:

Add the jhove conf files to

[dspace]/jhove direcoty

Here are the conf files:

jhove-aiff.conf
jhove-ascii.conf
jhove-gif.conf
jhove-jpeg.conff
jhove-pdf.conf
jhove-tiff.conf
jhove-utf8.conf
jhove-wave.conf
jhove-xml.conf

Also the following files were changed:

dspace-api/src/main/java/org/dspace/submit/step/UploadStep.java
dspace-jspui/dspace-jspui-api/src/main/java/org/dspace/app/webui/submit/step/JSPUploadStep.java
dspace-api/src/main/java/org/dspace/content/FormatIdentifier.java

dspace/modules/jspui/src/main/webapp/submit/get-file-format.jsp ( locally 
customized )
dspace/modules/jspui/src/main/webapp/submit/upload-error-virus.jsp ( new file - 
placed in locally modified area for the jspui interface)

These files are attached with this patch.

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