Hi Andrea,
I tested the email configuration and it is OK (I received the test email
sent from dspace to my gmail account).
Then, I tried to log in to dspace using my admin account but it did not
work as usual. Hence, following your advice I clicked on "forgot password"
and I placed my gmail address which I previously tested successfully. I
received nothing.
I examined the dspace log file (please see below); It seems that the
problem comes from postgresql. It claims that eperson relation does not
exist.
Using pgAdmin I examined the database "dspace": I found 90 tables (the
majority of them begin by cris). However, I did not found epersongroup and
metadatafieldregistry tables (though I found cris_rp_pdef table which has
20 columns but with no rows).
Thanks!
Mohamad
Below is my dspace.log:
2016-01-08 11:02:36,601 INFO
org.dspace.authenticate.PasswordAuthentication @
anonymous:session_id=9D7C3E48034CBFE34449B57211F17B82:ip_addr=127.0.0.1:*authenticate:attempting
password auth of user=xxxx*
2016-01-08 11:02:36,601 INFO org.dspace.app.webui.servlet.PasswordServlet
@
anonymous:session_id=9D7C3E48034CBFE34449B57211F17B82:ip_addr=127.0.0.1:*failed_login:email=xxxx,
result=4*
2016-01-08 11:04:00,101 WARN org.dspace.app.webui.servlet.DSpaceServlet @
*anonymous:session_id=9D7C3E48034CBFE34449B57211F17B82:ip_addr=127.0.0.1:database_error:org.postgresql.util.PSQLException\colon;
ERROR\colon; relation "eperson" does not exist*
Position\colon; 15
org.postgresql.util.PSQLException: ERROR: relation "eperson" does not exist
Position: 15
at
org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2103)
at
org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1836)
at
org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:257)
at
org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:512)
at
org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:388)
at
org.postgresql.jdbc2.AbstractJdbc2Statement.executeQuery(AbstractJdbc2Statement.java:273)
at
org.apache.commons.dbcp.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:96)
at
org.apache.commons.dbcp.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:96)
at
org.apache.commons.dbcp.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:96)
at
org.dspace.storage.rdbms.DatabaseManager.queryTable(DatabaseManager.java:223)
at
org.dspace.storage.rdbms.DatabaseManager.querySingleTable(DatabaseManager.java:364)
at
org.dspace.storage.rdbms.DatabaseManager.findByUnique(DatabaseManager.java:513)
at org.dspace.eperson.EPerson.findByEmail(EPerson.java:193)
at
org.dspace.app.webui.servlet.RegisterServlet.processEnterEmail(RegisterServlet.java:222)
at
org.dspace.app.webui.servlet.RegisterServlet.doDSPost(RegisterServlet.java:172)
at
org.dspace.app.webui.servlet.DSpaceServlet.processRequest(DSpaceServlet.java:115)
at
org.dspace.app.webui.servlet.DSpaceServlet.doPost(DSpaceServlet.java:73)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:647)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:728)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
org.dspace.utils.servlet.DSpaceWebappServletFilter.doFilter(DSpaceWebappServletFilter.java:78)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222)
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
at
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99)
at
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:953)
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
at
org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1023)
at
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:589)
at
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:312)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
On Wednesday, January 6, 2016 at 6:22:19 PM UTC+2, Andrea Bollini wrote:
>
> Hi Mohamad,
> 1) are you sure that the dspace database has been setup sucessful? what do
> you see if you try to access it using pgadmin or another GUI? how many
> tables? do you have any rows in the epersongroup, metadatafieldregistry,
> cris_rp_pdef tables?
>
> 2) you can test the email configuration using the command
> [dspace-installDir]/bin$
> ./dspace dsrun org.dspace.core.Email
>
> if it doesn't work check your dspace.cfg configuration
>
> https://wiki.duraspace.org/display/DSDOC4x/Configuration+Reference#ConfigurationReference-DSpaceEmailSettings
>
> 3) there are no errors in the tomcat startup, you can now focus on the
> dspace log files
>
> 4) to fast test a configuration change you can apply your changes directly
> to the dspace.cfg and the other files in the configuration folder but it is
> better to keep track of them in the build.properties file or in the
> corresponding source file when the change is not possible trough the
> build.properties so to preserve them in case of a rebuild of the system.
> Don't forget to restart tomcat to make active a configuration changes.
> Without restart changes to the dspace.cfg or other configuration files are
> not visible
>
> 5) the administration link appears only after a successful login with an
> administrator account
>
> Andrea
>
> Il 05/01/2016 20:22, Mohamad CHAITOU ha scritto:
>
> Hi Andrea,
>
> *1) First I tried to create a new admin account using create-administrator
> . I got an exception:*
> Exception: null
> java.lang.NullPointerException
> at java.util.regex.Matcher.getTextLength(Matcher.java:1234)
> at java.util.regex.Matcher.reset(Matcher.java:308)
> at java.util.regex.Matcher.<init>(Matcher.java:228)
> at java.util.regex.Pattern.matcher(Pattern.java:1088)
> at
> org.dspace.storage.rdbms.DatabaseManager.findByUnique(DatabaseManager.java:507)
> at
> org.dspace.storage.rdbms.DatabaseManager.find(DatabaseManager.java:475)
> at org.dspace.eperson.Group.find(Group.java:688)
> at
> org.dspace.administer.CreateAdministrator.createAdministrator(CreateAdministrator.java:239)
> at
> org.dspace.administer.CreateAdministrator.negotiateAdministratorDetails(CreateAdministrator.java:216)
> at
> org.dspace.administer.CreateAdministrator.main(CreateAdministrator.java:82)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:606)
> at
> org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:225)
> at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:77)
>
>
> *2) I have a local SMTP (exim4) and IMAP (dovecot) servers running well on
> my localhost (I can use them to send my local account without problems).
> But Dspace does not send any email when I click on forgot password (It
> gives internal error). *It seems that dspace cannot use the local SMTP
> server.
>
>
>
> *3) Below my catalina.log *INFO: Starting Servlet Engine: Apache
> Tomcat/7.0.42
> Jan 04, 2016 11:24:16 AM org.apache.catalina.startup.HostConfig
> deployDirectory
> INFO: Deploying web application directory
> /home/net/apache-tomcat-7.0.42/webapps/manager
> Jan 04, 2016 11:24:40 AM org.apache.catalina.util.SessionIdGenerator
> createSecureRandom
> INFO: Creation of SecureRandom instance for session ID generation using
> [SHA1PRNG] took [23,312] milliseconds.
> Jan 04, 2016 11:24:40 AM org.apache.catalina.startup.HostConfig
> deployDirectory
> INFO: Deploying web application directory
> /home/net/apache-tomcat-7.0.42/webapps/host-manager
> Jan 04, 2016 11:24:40 AM org.apache.catalina.startup.HostConfig
> deployDirectory
> INFO: Deploying web application directory
> /home/net/apache-tomcat-7.0.42/webapps/examples
> Jan 04, 2016 11:24:40 AM org.apache.catalina.startup.HostConfig
> deployDirectory
> INFO: Deploying web application directory
> /home/net/apache-tomcat-7.0.42/webapps/jspui
> Jan 04, 2016 11:24:41 AM org.apache.catalina.loader.WebappClassLoader
> validateJarFile
> INFO:
> validateJarFile(/home/net/apache-tomcat-7.0.42/webapps/jspui/WEB-INF/lib/jsp-api-2.1.jar)
>
> - jar not loaded. See Servlet Spec 2.3, section 9.7.2. Offending class:
> javax/el/Expression.class
> Jan 04, 2016 11:24:53 AM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI: http://java.sun.com/jstl/fmt is already defined
> Jan 04, 2016 11:24:53 AM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already
> defined
> Jan 04, 2016 11:24:53 AM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI: http://java.sun.com/jstl/core is already defined
> Jan 04, 2016 11:24:53 AM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/core is already
> defined
> Jan 04, 2016 11:24:53 AM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI: http://java.sun.com/jstl/fmt_rt is already defined
> Jan 04, 2016 11:24:53 AM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI: http://java.sun.com/jstl/fmt is already defined
> Jan 04, 2016 11:24:53 AM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/fmt is already
> defined
> Jan 04, 2016 11:24:53 AM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already
> defined
> Jan 04, 2016 11:24:53 AM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI:
> http://jakarta.apache.org/taglibs/standard/permittedTaglibs is already
> defined
> Jan 04, 2016 11:24:53 AM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI:
> http://jakarta.apache.org/taglibs/standard/scriptfree is already defined
> Jan 04, 2016 11:24:53 AM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI: http://java.sun.com/jstl/sql_rt is already defined
> Jan 04, 2016 11:24:53 AM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI: http://java.sun.com/jstl/sql is already defined
> Jan 04, 2016 11:24:53 AM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/sql is already
> defined
> Jan 04, 2016 11:24:53 AM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI: http://java.sun.com/jstl/xml_rt is already defined
> Jan 04, 2016 11:24:53 AM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI: http://java.sun.com/jstl/xml is already defined
> Jan 04, 2016 11:24:53 AM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/xml is already
> defined
> Jan 04, 2016 11:25:11 AM org.apache.catalina.startup.HostConfig
> deployDirectory
> INFO: Deploying web application directory
> /home/net/apache-tomcat-7.0.42/webapps/docs
> Jan 04, 2016 11:25:11 AM org.apache.coyote.AbstractProtocol start
> INFO: Starting ProtocolHandler ["http-bio-8080"]
> Jan 04, 2016 11:25:11 AM org.apache.coyote.AbstractProtocol start
> INFO: Starting ProtocolHandler ["ajp-bio-8009"]
> Jan 04, 2016 11:25:11 AM org.apache.catalina.startup.Catalina start
> INFO: Server startup in 54954 ms
> Jan 04, 2016 11:25:21 AM org.apache.jasper.compiler.TldLocationsCache
> tldScanJar
> INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable
> debug logging for this logger for a complete list of JARs that were scanned
> but no TLDs were found in them. Skipping unneeded JARs during scanning can
> improve startup time and JSP compilation time.
>
>
>
>
>
> *4) If I want to change something in the dspace.cfg (I want to try another
> SMTP server). Should I modify build.properties and rebuild dspace from
> scratch ? or can I edit dspace.cfg manually ? 5) The administration link is
> absent on my home dspace page *Any advice will be surely helpful
> *, *Thanks!
> Mohamad
>
> On Saturday, January 2, 2016 at 8:49:00 PM UTC+2, Mohamad CHAITOU wrote:
>>
>> Dear All,
>>
>> I have been struggling since a week to solve this problem without
>> success.
>> I installed Dspace CRIS (4.x.x) on ubuntu inside a vmware virtual
>> machine. Everything has compiled successfully. However, when I try to
>> invoke Dspace from tomact it gives me the following error (plz see below).
>> It seems that the uri http://www.dspace.org/dspace-tags.tld is not
>> active (I tried to open it from browser but i gives HTTP error 404).
>> Please find below the error details and the specifications of my
>> installation.
>>
>>
>> HTTP Status 500 - The absolute uri: http://www.dspace.org/dspace-tags.tld
>> cannot be resolved in either web.xml or the jar files deployed with this
>> application
>>
>> type Exception report
>>
>> message The absolute uri: http://www.dspace.org/dspace-tags.tld cannot
>> be resolved in either web.xml or the jar files deployed with this
>> application
>>
>> description The server encountered an internal error that prevented it
>> from fulfilling this request.
>>
>> exception
>>
>> org.apache.jasper.JasperException: The absolute uri:
>> http://www.dspace.org/dspace-tags.tld cannot be resolved in either
>> web.xml or the jar files deployed with this application
>>
>> org.apache.jasper.compiler.DefaultErrorHandler.jspError(DefaultErrorHandler.java:56)
>>
>> org.apache.jasper.compiler.ErrorDispatcher.dispatch(ErrorDispatcher.java:445)
>>
>> org.apache.jasper.compiler.ErrorDispatcher.jspError(ErrorDispatcher.java:117)
>>
>> org.apache.jasper.compiler.TagLibraryInfoImpl.generateTLDLocation(TagLibraryInfoImpl.java:311)
>>
>> org.apache.jasper.compiler.TagLibraryInfoImpl.<init>(TagLibraryInfoImpl.java:152)
>>
>> org.apache.jasper.compiler.Parser.parseTaglibDirective(Parser.java:410)
>> org.apache.jasper.compiler.Parser.parseDirective(Parser.java:475)
>> org.apache.jasper.compiler.Parser.parseElements(Parser.java:1427)
>> org.apache.jasper.compiler.Parser.parse(Parser.java:138)
>>
>> org.apache.jasper.compiler.ParserController.doParse(ParserController.java:242)
>>
>> org.apache.jasper.compiler.ParserController.parse(ParserController.java:102)
>> org.apache.jasper.compiler.Compiler.generateJava(Compiler.java:198)
>> org.apache.jasper.compiler.Compiler.compile(Compiler.java:373)
>> org.apache.jasper.compiler.Compiler.compile(Compiler.java:353)
>> org.apache.jasper.compiler.Compiler.compile(Compiler.java:340)
>>
>> org.apache.jasper.JspCompilationContext.compile(JspCompilationContext.java:646)
>>
>> org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:357)
>>
>> org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:390)
>> org.apache.jasper.servlet.JspServlet.service(JspServlet.java:334)
>> javax.servlet.http.HttpServlet.service(HttpServlet.java:728)
>>
>> note The full stack trace of the root cause is available in the Apache
>> Tomcat/7.0.42 logs.
>> Apache Tomcat/7.0.42
>>
>> Installation specification
>> apache-ant-1.8.4
>> apache-maven-3.0.4
>> apache-tomcat-7.0.42
>> psql (PostgreSQL) 9.4.5
>> Oracle JDK 7 (1.7.0_79)
>>
>> Thanks in advance,
>> Mohamad Chaitou
>>
> --
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>
>
>
> --
> Andrea Bollini
> International Business Development, Deputy Leader
> Open Source & Open Standards Strategy, Head
> Cineca
>
> Via dei Tizii, 6
> 00185 Roma, Italy
> tel. +39 06 44 486 087 - mob. +39 348 82 77 525http://www.cineca.it
>
>
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