Hi Massimiliano,
I would always work with a instance first, for all kinds of changes.,
unless very small cosmetic ones.
Our procedure is to create a git branch for the feature and work with it
on a test instance until it is ready to be merged and deployed in
production.
In case of doi registration, you can get a test prefix from you provider
and work with the datacite test server.
see https://support.datacite.org/docs/create-a-client-in-fabrica-test
Hope this helps
Claudia Jürgen
Am 19.02.2019 um 16:40 schrieb Massimiliano CILURZO:
Hi Claudia,
Ok but the system is in production accoding to you is safe to re build
and deploy?
Thanks
Best regards
Massimiliano
Il giorno martedì 19 febbraio 2019 16:06:00 UTC+1, Claudia Jürgen ha
scritto:
Hello Massimiliano,
if you change something in the source code you got to build and deploy
your application again.
Hope this helps
Claudia Jürgen
Am 19.02.2019 um 14:11 schrieb Massimiliano CILURZO:
Dear Cluadia,
I have changed to Element identifier = new Element("identifier",
"http://datacite.org/schema/kernel-3";);
In DataCiteConnector.java.
According to you I have to restart the system, after this change?
Thanks
Regards
Massimiliano
Il giorno martedì 19 febbraio 2019 13:02:39 UTC+1, Claudia Jürgen ha
scritto:
Hello Massimiliano,
as Mark already pointed out there is the issue for 5.x for the schema
being hardcoded see:
https://jira.duraspace.org/browse/DS-4044
in
https://github.com/DSpace/DSpace/blob/dspace-5_x/dspace-api/src/main/java/org/dspace/identifier/doi/DataCiteConnector.java#L1039
Hope this helps
Claudia Jürgen
Am 19.02.2019 um 12:52 schrieb Massimiliano CILURZO:
Dear Claudia,
The dc.identifier.uri is present in every item.
And till 2 weeks ago the doi's were mint with the schema 2.2.
Now our server doesn't mint any DOI, even with the new schema 3.
If I do /dspace/bin/dspace doi-organiser -l after inserting a new
item.
There isn't new doi.
Thanks
Best regards
Massimiliano
Il giorno martedì 19 febbraio 2019 10:01:52 UTC+1, Claudia Jürgen ha
scritto:
Hello Massimiliano,
you need not add dc.identifier.uri (not doi). This is done prior to
actually registering a doi with datacite, depending on the status:
https://github.com/DSpace/DSpace/blob/dspace-5_x/dspace-api/src/main/java/org/dspace/identifier/DOIIdentifierProvider.java#L69
A newly ingested item will have the status 7:
UPDATE_BEFORE_REGISTRATION
After having run doi-organiser -u this will turn to 1:
TO_BE_REGISTERED
The metadata dc.identifier.uri is set in this process
https://github.com/DSpace/DSpace/blob/dspace-5_x/dspace-api/src/main/java/org/dspace/identifier/DOIIdentifierProvider.java#L881
You can check items queued with:
[dspace]/bin/dspace doi-organiser -l
In the doi table you will see the status of the documents.
And check the logs whether something went wrong during registration
and
you ended up with an inconsistent status.
Hope this helps
Claudia Jürgen
Am 19.02.2019 um 09:19 schrieb Massimiliano CILURZO:
Dear Claudia,
In this item there is no DOI but in the item submission form the
field
dc.identifier.doi is present.
And generally I leave this field blank, than after the submission and
doi
url appear on the item page after using
/dspace/bin/dspace doi-organiser -u
Is this correct or I'm doing wrong?
Thanks
Best regards
Massimiliano
Il giorno venerdì 15 febbraio 2019 12:51:19 UTC+1, Claudia Jürgen ha
scritto:
P. S.
best try the check first this one:
http://elea.unisa.it/xmlui/handle/10556/2854?show=full <
http://www.google.com/url?q=http%3A%2F%2Felea.unisa.it%2Fxmlui%2Fhandle%2F10556%2F2854%3Fshow%3Dfull&sa=D&sntz=1&usg=AFQjCNHwu6qjaTVQLETOX5cadO47QinA9A>
<
http://www.google.com/url?q=http%3A%2F%2Felea.unisa.it%2Fxmlui%2Fhandle%2F10556%2F2854%3Fshow%3Dfull&sa=D&sntz=1&usg=AFQjCNHwu6qjaTVQLETOX5cadO47QinA9A>
this seems not to have dc.identifier.doi which is necessary for
registration or update
So try
[dspace]/bin/dspace dsrun
org.dspace.content.crosswalk.XSLTDisseminationCrosswalk DataCite
10556/2854 [path/to/output]
Hope this helps
Claudia Jürgen
Am 15.02.2019 um 11:01 schrieb Claudia Jürgen:
Hello Massimiliano,
we are running DSpace 5.x with DataCite 4.1 (heavily relying on our
own
metadata and thus not yet backported to DSpace).
Prior to this we had DataCite 3.1 with no problems.
You can test your crosswalk by crosswalking an item with:
[dspace]/bin/dspace dsrun
org.dspace.content.crosswalk.XSLTDisseminationCrosswalk DataCite
[YOUR-HANDLE] [path/to/output]
and then validating the resulting xml
That is allways advisable prior to changing the one in production.
The difference between 5.x and 6.x is that in 6.x some things like
the
namespace was made configurable which was prior hardcoded in the
DataCiteConnector.
Hope this helps
Claudia Jürgen
Am 14.02.2019 um 18:55 schrieb Tim Donohue:
Hi Massimiliano,
The main error message there seems to be this one:
While reserving the DOI doi:10.10xxx/un**-1194, we got a http status
code
422 and the message "This element is not expected. expected is one of
( { http://datacite.org/schema/kernel-3}identifier, {
http://datacite.org/schema/kernel-3}creators, {
http://datacite.org/schema/kernel-3}titles, {
http://datacite.org/schema/kernel-3}publisher, {
http://datacite.org/schema/kernel-3}publicationyear, {
http://datacite.org/schema/kernel-3}subjects, {
http://datacite.org/schema/kernel-3}contributors, {
http://datacite.org/schema/kernel-3}dates, {
http://datacite.org/schema/kernel-3}language, {
http://datacite.org/schema/kernel-3}resourcetype ).
That error is saying that the DataCite API seems to be returning a
422
(Unprocessable Entity) Response with an error message that says "This
element is not expected" and a list of expected elements.
I'm going to admit, I'm not familiar myself with the DataCite service
or
this DOI connector in DSpace. (It was written & tested by other
developers
-- DSpace is a community-wide effort, and I'm unable to review every
line
of code.) It's possible either the patch you applied didn't full
"work"
for DSpace 5.6, or maybe there's another fix in DSpace 6.0 that I
overlooked that provides compatibility with DataCite schema 3.x
Does anyone else on this list have experience in using the DOI
connector
with DataCite Schema 3.x in either DSpace 6.x or 5.x? I'm wondering
if
someone else may have seen errors of this sort before, or perhaps can
confirm that DSpace 6.x works fine with DataCite Schema 3.x?
- Tim
On Thu, Feb 14, 2019 at 9:56 AM Massimiliano CILURZO <
[email protected]
<javascript:>>
wrote:
Dear Tim,
I have tried the second option and updated to schema 3.1
first.
But the answer after
/dspace/bin/dspace doi-organiser -u
is this in dspace.log
ERROR org.dspace.identifier.doi.DOIOrganiser @ It wasn't possible
to
update this identifier: doi:10.14273/unisa-937 Exceptions code:
BAD_ANSWER
org.dspace.identifier.doi.DOIIdentifierException: Unable to parse an
answer from DataCite API. Please have a look into DSpace logs.
at
org.dspace.identifier.doi.DataCiteConnector.reserveDOI(DataCiteConnector.java:564)
at
org.dspace.identifier.doi.DataCiteConnector.updateMetadata(DataCiteConnector.java:681)
at
org.dspace.identifier.DOIIdentifierProvider.updateMetadataOnline(DOIIdentifierProvider.java:412)
at
org.dspace.identifier.doi.DOIOrganiser.update(DOIOrganiser.java:669)
at
org.dspace.identifier.doi.DOIOrganiser.runCLI(DOIOrganiser.java:265)
at
org.dspace.identifier.doi.DOIOrganiser.main(DOIOrganiser.java:82)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at
org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:226)
at
org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:78)
2019-02-14 16:43:43,985 WARN
org.dspace.identifier.doi.DataCiteConnector
@ While reserving the DOI doi:10.10xxx/un**-1194, we got a http
status code
422 and the message "This element is not expected. expected is one
of ( { http://datacite.org/schema/kernel-3}identifier, {
http://datacite.org/schema/kernel-3}creators, {
http://datacite.org/schema/kernel-3}titles, {
http://datacite.org/schema/kernel-3}publisher, {
http://datacite.org/schema/kernel-3}publicationyear, {
http://datacite.org/schema/kernel-3}subjects, {
http://datacite.org/schema/kernel-3}contributors, {
http://datacite.org/schema/kernel-3}dates, {
http://datacite.org/schema/kernel-3}language, {
http://datacite.org/schema/kernel-3}resourcetype ). at line 3,
column 0".
2019-02-14 16:43:43,985 ERROR org.dspace.identifier.doi.DOIOrganiser
@ It
wasn't possible to update this identifier: doi:10.14273/unisa-1194
Exceptions code: BAD_ANSWER
Could you help me to understand the reason?
Thanks
Best regards
Massimiliano
Il giorno martedì 12 febbraio 2019 19:23:47 UTC+1, Tim Donohue ha
scritto:
Hello Massimiliano,
Since you are running DSpace 5.6, you'd have two options to get to
DataCite v4.1 compatibility:
- Either you should upgrade to DSpace 6.3 (the latest version
of
6.x), and then apply this patch
https://github.com/DSpace/DSpace/pull/2321
- Or, you would need to apply *two* patches to DSpace 5.x.
First,
you'd have to apply the fixes to update to DataCite schema v3.1
:
https://github.com/DSpace/DSpace/pull/1197 (This is the fix
that was
included as part of 6.0). Then you would need to apply this
patch:
https://github.com/DSpace/DSpace/pull/2321
You also may want to simply see if upgrading to DSpace 6.3 would
*solve*
the issues you are having. In your original email, it was unclear
if you
absolutely *must* be running DataCite schema v4.1, or if possibly
DataCite
schema v3.1 would work. So, honestly, my recommendation would be
to first
start up a test server with DSpace 6.3 on it to see if
compatibility with
DataCite schema 3.1 fixes the issues you are seeing. If so, you
may not
even need to apply the patch to update to DataCite schema 4.1. I
cannot
give advice myself on whether upgrading to DSpace 6.3 will solve
the issue
or not -- that's likely something you'd need to either test out
yourself,
or talk to the DataCite team about.
- Tim
On Tue, Feb 12, 2019 at 12:12 PM Massimiliano CILURZO <
[email protected]>
wrote:
Dear Tim.
I'm running DSpace 5.6 I could install this patch on it?
I would like to try this patch, If you tell me that I could use it
only
on DSpace 6.0 I'll try it first on a test server with DSpace 6.0.
If I can I'll try to help for this patch with some notes about it.
Thanks
Best regards
Massimiliano
Il giorno martedì 12 febbraio 2019 17:13:42 UTC+1, Tim Donohue ha
scritto:
Massimiliano,
Just a follow-up to Mark's previous note. DSpace 6.x is using
DataCite
Schema 3.1 (so if you are seeing Schema 2.2, I'm assuming you
aren't using
the latest DSpace), see this update which was released in DSpace
6.0: https://jira.duraspace.org/browse/DS-2924
As Mark notes, we have a pending update to DataCite Schema 4.1,
which
likely won't be released until 6.4 (at the earliest). If you are
already
running DSpace 6.x, this patch should be relatively easy to apply
immediately. If you are able to help test this patch, then we'd
appreciate
it if you could add notes to the patch (in GitHub), as that will
allow us
to more easily approve/merge the change in time for 6.4. Again,
here's
where this patch is: https://github.com/DSpace/DSpace/pull/2321
If you have further questions, let us know on this list.
Tim
On Mon, Feb 11, 2019 at 8:00 AM Mark H. Wood <[email protected]>
wrote:
On Monday, February 11, 2019 at 4:23:53 AM UTC-5, Massimiliano
CILURZO
wrote:
The DOI Datacite schema now is arrived to 4.1, we have on
DSpace version 2.2 and it could have some problem with the new
managemant
software of DATACITE.
With a schema version 2.2 it cuold be impossible to do an
update via
the "DOI DataCite Fabrica" system.
So I would like to know if it is possible to update this schema
to
4.1.
There is a patch to upgrade to 4.0:
https://github.com/DSpace/DSpace/pull/2321 which has not yet been
merged.
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Claudia Juergen
Eldorado
Technische Universität Dortmund
Universitätsbibliothek
Vogelpothsweg 76
44227 Dortmund
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Fax: +49 231-755 40 32 [email protected] <javascript:>
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Eldorado
Technische Universität Dortmund
Universitätsbibliothek
Vogelpothsweg 76
44227 Dortmund
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Eldorado
Technische Universität Dortmund
Universitätsbibliothek
Vogelpothsweg 76
44227 Dortmund
Tel.: +49 231-755 40 43
Fax: +49 231-755 40 [email protected] <javascript:>
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Universitätsbibliothek
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44227 Dortmund
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Technische Universität Dortmund
Universitätsbibliothek
Vogelpothsweg 76
44227 Dortmund
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Fax: +49 231-755 40 32
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Universitätsbibliothek
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