FYI Found extra JNDI section in tomcat's server.xml from previous version 
of dspace (5 probably).  Likely the issue.  Will post if so.

On Friday, April 2, 2021 at 3:30:40 PM UTC-5 Nick Lauland wrote:

> Hi guys,
>
> We run ~20 dspaces and one is having strange problems beyond my ability to 
> diagnose.  I'm not a developer so I'm pretty clueless what is going on.  I 
> apologize for the large amount of log listings, I'm not sure which are 
> important or not.
>
>  In tomcat's catalina.out I see the following:
>
> This repeated 20+ times
> 28-Mar-2021 08:09:07.220 WARNING [ajp-nio-127.0.0.1-8009-exec-484] 
> org.apache.catalina.util.SessionIdGeneratorBase.creat
> eSecureRandom Creation of SecureRandom instance for session ID generation 
> using [SHA1PRNG] took [11,253] milliseconds.
>
> Many of these mentioning different beans:
>  INFO [localhost-startStop-1] (DefaultListableBeanFactory.java:675) - 
> Overriding bean definition for bean 'org.dspace.id
> entifier.service.IdentifierService': replacing [Generic bean: class 
> [org.dspace.identifier.IdentifierServiceImpl]; scope
> =singleton; abstract=false; lazyInit=false; autowireMode=2; 
> dependencyCheck=0; autowireCandidate=true; primary=false; fa
> ctoryBeanName=null; factoryMethodName=null; initMethodName=null; 
> destroyMethodName=null; defined in URL [jar:file:/ebs/t
> amucc-dspace/webapps/swordv2/WEB-INF/lib/dspace-api-6.4-SNAPSHOT.jar!/spring/spring-dspace-core-services.xml]]
>  
> with [Gen
> eric bean: class [org.dspace.identifier.IdentifierServiceImpl]; 
> scope=singleton; abstract=false; lazyInit=false; autowir
> eMode=2; dependencyCheck=0; autowireCandidate=true; primary=false; 
> factoryBeanName=null; factoryMethodName=null; initMet
> hodName=null; destroyMethodName=null; defined in file 
> [/ebs/tamucc-dspace/config/spring/api/identifier-service.xml]]
>
> And finally, probably (?) the key:
> 29-Mar-2021 08:09:10.503 WARNING [main] 
> org.apache.catalina.core.NamingContextListener.addResource 
> naming.jmxRegistratio
> nFailed
> 29-Mar-2021 08:09:10.547 SEVERE [main] 
> org.apache.catalina.mbeans.GlobalResourcesLifecycleListener.createMBeans 
> Exceptio
> n processing Global JNDI Resources
> javax.naming.NamingException: Could not create resource factory instance 
> [Root exception is java.lang.ClassNotFo
> undException: org.apache.tomcat.dbcp.dbcp2.BasicDataSourceFactory]
>
> The problem is it will stay up for days with  no major issues.
>
> When it finally crashes, no messages in catalina.out, but these repeating 
> in dspace.log:
> 2021-04-02 07:35:46,568 WARN  
> org.hibernate.engine.jdbc.spi.SqlExceptionHelper @ SQL Error: 0, SQLState: 
> null
> 2021-04-02 07:35:47,071 ERROR 
> org.hibernate.engine.jdbc.spi.SqlExceptionHelper @ Cannot get a connection, 
> pool error Timeout waiting for idle object
> ...
> 2021-04-02 07:36:32,634 ERROR 
> org.dspace.app.xmlui.cocoon.DSpaceCocoonServletFilter @ Serious Error 
> Occurred Processing Request!
> javax.servlet.ServletException: org.apache.cocoon.ProcessingException: 
> Sitemap: error invoking action
> ...
> Caused by: org.hibernate.exception.GenericJDBCException: Could not open 
> connection
>
> If any of this rings a bell, I'd appreciate any info.  Thanks!
>
>

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