Hi,
in our institution, we have been using Invenio 1, but we have migrated to
DSpace 7.6 (we have been preparing the migratio since DSpace 6.something).
Now in DSpace 7.6, metadata of some Items cannot be edited via API nor the
Administration Interface. The only way to edit for example URI is direct
database access, which is not ideal.
This problem however, occurs only on 50 entries from the total number of
1500+ entries which had underwent the migration. There is no visible
difference on the metadata either.
Any attempt to edit metadata from Admin UI gives this response:
HTTP/1.1 500
Date: Tue, 12 Mar 2024 15:47:38 GMT
Server: Apache/2.4.37 (Red Hat Enterprise Linux) OpenSSL/1.1.1k
Vary: Origin,Access-Control-Request-Method,Access-Control-Request-Headers
Content-Language: en
X-Content-Type-Options: nosniff
X-XSS-Protection: 1; mode=block
Cache-Control: no-cache, no-store, max-age=0, must-revalidate
Pragma: no-cache
Expires: 0
Strict-Transport-Security: max-age=31536000 ; includeSubDomains
X-Frame-Options: DENY
Content-Type: application/json;charset=UTF-8
Connection: close
Transfer-Encoding: chunked
{"timestamp":"2024-03-12T15:47:38.237+00:00","status":500,"error":"Internal
Server Error","message":"An exception has
occurred","path":"/server/api/core/items/065c1a21-7410-4ce6-8f61-a92b30b8c61a"}
in the DSpace logs, there is nothing meaningfull either. From what I've
been able to gather, these are logs significant for the performed action:
024-03-12 16:47:32,787 INFO unknown unknown org.eclipse.jetty.util.log @
Logging initialized @4943ms to org.eclipse.jetty.util.log.Slf4jLog
2024-03-12 16:47:32,989 INFO unknown unknown
org.dspace.importer.external.service.ImportService @ Loading 6 import
sources.
2024-03-12 16:47:34,251 INFO unknown unknown
org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor
@ Autowired annotation should only be used on methods with parameters:
public java.lang.String
org.dspace.storage.bitstore.S3BitStoreService.getBucketName()
2024-03-12 16:47:34,810 INFO unknown unknown
org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor
@ Autowired annotation is not supported on static methods: public static
void
org.dspace.rdf.storage.DOIURIGenerator.setFallback(org.dspace.rdf.storage.URIGenerator)
2024-03-12 16:47:34,814 INFO unknown unknown
org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor
@ Autowired annotation is not supported on static methods: public static
void
org.dspace.rdf.storage.DOIHandleURIGenerator.setFallback(org.dspace.rdf.storage.URIGenerator)
2024-03-12 16:47:35,288 INFO unknown unknown
org.ehcache.core.EhcacheManager @ Cache 'sherpa.searchByJournalISSN'
removed from Eh107InternalCacheManager.
2024-03-12 16:47:35,290 INFO unknown unknown
org.ehcache.core.EhcacheManager @ Cache 'manifests' removed from
Eh107InternalCacheManager.
2024-03-12 16:47:35,292 INFO unknown unknown
org.ehcache.core.EhcacheManager @ Cache 'canvasdimensions' removed from
Eh107InternalCacheManager.
2024-03-12 16:47:36,938 INFO unknown unknown
org.apache.commons.beanutils.FluentPropertyBeanIntrospector @ Error when
creating PropertyDescriptor for public final void
org.apache.commons.configuration2.AbstractConfiguration.setProperty(java.lang.String,java.lang.Object)!
Ignoring this property.
2024-03-12 16:47:37,250 INFO unknown unknown
org.apache.commons.beanutils.FluentPropertyBeanIntrospector @ Error when
creating PropertyDescriptor for public final void
org.apache.commons.configuration2.AbstractConfiguration.setProperty(java.lang.String,java.lang.Object)!
Ignoring this property.
2024-03-12 16:47:37,271 INFO unknown unknown
org.apache.commons.beanutils.FluentPropertyBeanIntrospector @ Error when
creating PropertyDescriptor for public final void
org.apache.commons.configuration2.AbstractConfiguration.setProperty(java.lang.String,java.lang.Object)!
Ignoring this property.
2024-03-12 16:47:37,276 INFO unknown unknown
org.apache.commons.beanutils.FluentPropertyBeanIntrospector @ Error when
creating PropertyDescriptor for public final void
org.apache.commons.configuration2.AbstractConfiguration.setProperty(java.lang.String,java.lang.Object)!
Ignoring this property.
2024-03-12 16:47:37,279 INFO unknown unknown
org.apache.commons.beanutils.FluentPropertyBeanIntrospector @ Error when
creating PropertyDescriptor for public final void
org.apache.commons.configuration2.AbstractConfiguration.setProperty(java.lang.String,java.lang.Object)!
Ignoring this property.
2024-03-12 16:47:37,283 INFO unknown unknown
org.apache.commons.beanutils.FluentPropertyBeanIntrospector @ Error when
creating PropertyDescriptor for public
org.apache.commons.configuration2.builder.FileBasedBuilderParametersImpl
org.apache.commons.configuration2.builder.FileBasedBuilderParametersImpl.setURL(java.net.URL,org.apache.commons.configuration2.io.URLConnectionOptions)!
Ignoring this property.
2024-03-12 16:47:37,283 INFO unknown unknown
org.apache.commons.beanutils.FluentPropertyBeanIntrospector @ Error when
creating PropertyDescriptor for public java.lang.Object
org.apache.commons.configuration2.builder.FileBasedBuilderParametersImpl.setURL(java.net.URL,org.apache.commons.configuration2.io.URLConnectionOptions)!
Ignoring this property.
2024-03-12 16:47:37,293 INFO unknown unknown
org.apache.commons.beanutils.FluentPropertyBeanIntrospector @ Error when
creating PropertyDescriptor for public final void
org.apache.commons.configuration2.AbstractConfiguration.setProperty(java.lang.String,java.lang.Object)!
Ignoring this property.
2024-03-12 16:47:39,806 INFO unknown unknown
org.ehcache.xml.XmlConfiguration @ Loading Ehcache XML configuration from
/opt/dspace/config/ehcache.xml.
2024-03-12 16:47:40,513 INFO unknown unknown
org.terracotta.offheapstore.paging.UpfrontAllocatingPageSource @ Allocating
4MB in chunks
2024-03-12 16:47:40,544 INFO unknown unknown
org.ehcache.core.EhcacheManager @ Cache 'sherpa.searchByJournalISSN'
created in Eh107InternalCacheManager.
2024-03-12 16:47:40,556 INFO unknown unknown
org.terracotta.offheapstore.paging.UpfrontAllocatingPageSource @ Allocating
10.0MB in chunks
2024-03-12 16:47:40,562 INFO unknown unknown
org.ehcache.core.EhcacheManager @ Cache 'manifests' created in
Eh107InternalCacheManager.
2024-03-12 16:47:40,573 INFO unknown unknown
org.terracotta.offheapstore.paging.UpfrontAllocatingPageSource @ Allocating
4MB in chunks
2024-03-12 16:47:40,578 INFO unknown unknown
org.ehcache.core.EhcacheManager @ Cache 'canvasdimensions' created in
Eh107InternalCacheManager.
2024-03-12 16:47:40,620 INFO unknown unknown
org.ehcache.jsr107.Eh107CacheManager @ Registering Ehcache MBean
javax.cache:type=CacheStatistics,CacheManager=file./opt/dspace/config/ehcache.xml,Cache=sherpa.searchByJournalISSN
2024-03-12 16:47:40,623 INFO unknown unknown
org.ehcache.jsr107.Eh107CacheManager @ Registering Ehcache MBean
javax.cache:type=CacheStatistics,CacheManager=file./opt/dspace/config/ehcache.xml,Cache=manifests
2024-03-12 16:47:40,624 INFO unknown unknown
org.ehcache.jsr107.Eh107CacheManager @ Registering Ehcache MBean
javax.cache:type=CacheStatistics,CacheManager=file./opt/dspace/config/ehcache.xml,Cache=canvasdimensions
2024-03-12 16:47:40,634 INFO unknown unknown
org.ehcache.jsr107.Eh107CacheManager @ Registering Ehcache MBean
javax.cache:type=CacheStatistics,CacheManager=file./opt/dspace/config/ehcache.xml,Cache=sherpa.searchByJournalISSN
2024-03-12 16:47:40,635 INFO unknown unknown
org.ehcache.jsr107.Eh107CacheManager @ Registering Ehcache MBean
javax.cache:type=CacheStatistics,CacheManager=file./opt/dspace/config/ehcache.xml,Cache=manifests
2024-03-12 16:47:40,636 INFO unknown unknown
org.ehcache.jsr107.Eh107CacheManager @ Registering Ehcache MBean
javax.cache:type=CacheStatistics,CacheManager=file./opt/dspace/config/ehcache.xml,Cache=canvasdimensions
2024-03-12 16:47:40,872 INFO unknown unknown org.eclipse.jetty.util.log @
Logging initialized @5378ms to org.eclipse.jetty.util.log.Slf4jLog
2024-03-12 16:47:41,082 INFO unknown unknown
org.dspace.importer.external.service.ImportService @ Loading 6 import
sources.
2024-03-12 16:47:42,370 INFO unknown unknown
org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor
@ Autowired annotation should only be used on methods with parameters:
public java.lang.String
org.dspace.storage.bitstore.S3BitStoreService.getBucketName()
There is the request which had triggered this response, I tried to add a
metadata value (valid according to the schema) for Handle.net. It let me
add the value, but not to save the edited item afterwards
PATCH /server/api/core/items/065c1a21-7410-4ce6-8f61-a92b30b8c61a HTTP/1.1
Host: repozitar.techlib.cz
User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:123.0) Gecko/20100101
Firefox/123.0
Accept: application/json, text/plain, */*
Accept-Language: cs;q=1,en-US;q=0.1,en;q=0.09
Accept-Encoding: gzip, deflate, br
Content-Type: application/json; charset=utf-8
authorization: Bearer
eyJhbGciOiJIUzI1NiJ9.eyJlaWQiOiJkNWEyYjZhNi0yNTEyLTRjZWMtOTRkNS02OTI3MzM2NTBkZDEiLCJzZyI6WyJkNTNlMDdlMi0yODA0LTRiZmItOTNiNS1jMmU1ZDNkNWQwNjciXSwiYXV0aGVudGljYXRpb25NZXRob2QiOiJsZGFwIiwiZXhwIjoxNzEwMjU5NDE5fQ._l_C2SuSkA2m_oMxSr5f8oneFPDaDPC6XnRj8Ct21rY
X-XSRF-TOKEN: d31cb6c1-89fb-434e-93d0-db8797cb9549
X-CORRELATION-ID: 6f1fdc32-509b-4b18-babc-a73042f71301
X-REFERRER:
/entities/publication/065c1a21-7410-4ce6-8f61-a92b30b8c61a/edit/metadata
Content-Length: 130
Origin: https://repozitar.techlib.cz
Connection: keep-alive
Referer:
https://repozitar.techlib.cz/entities/publication/065c1a21-7410-4ce6-8f61-a92b30b8c61a/edit/metadata
Cookie: MyHalBrowserCsrfToken=ba9626ff-445f-462d-b3af-cd21bc9d1438;
MyHalBrowserToken=eyJhbGciOiJIUzI1NiJ9.eyJlaWQiOiJkNWEyYjZhNi0yNTEyLTRjZWMtOTRkNS02OTI3MzM2NTBkZDEiLCJzZyI6WyJkNTNlMDdlMi0yODA0LTRiZmItOTNiNS1jMmU1ZDNkNWQwNjciXSwiYXV0aGVudGljYXRpb25NZXRob2QiOiJsZGFwIiwiZXhwIjoxNzA0MzY4MTE4fQ.LQSh-FbJ8-sJbIAVfV1DHZ4XX-T1P3Bwg2gHwOVlzU8;
DSPACE-XSRF-COOKIE=d31cb6c1-89fb-434e-93d0-db8797cb9549;
klaro-anonymous=%7B%22authentication%22%3Atrue%2C%22preferences%22%3Atrue%2C%22acknowledgement%22%3Atrue%7D;
INVENIOSESSION=aaccab61510027d7497144ec99375a58;
klaro-d5a2b6a6-2512-4cec-94d5-692733650dd1={%22authentication%22:true%2C%22preferences%22:true%2C%22acknowledgement%22:true};
CORRELATION-ID=6f1fdc32-509b-4b18-babc-a73042f71301; dsLanguage=cs;
XSRF-TOKEN=d31cb6c1-89fb-434e-93d0-db8797cb9549;
dsAuthInfo={%22accessToken%22:%22eyJhbGciOiJIUzI1NiJ9.eyJlaWQiOiJkNWEyYjZhNi0yNTEyLTRjZWMtOTRkNS02OTI3MzM2NTBkZDEiLCJzZyI6WyJkNTNlMDdlMi0yODA0LTRiZmItOTNiNS1jMmU1ZDNkNWQwNjciXSwiYXV0aGVudGljYXRpb25NZXRob2QiOiJsZGFwIiwiZXhwIjoxNzEwMjU5NDE5fQ._l_C2SuSkA2m_oMxSr5f8oneFPDaDPC6XnRj8Ct21rY%22%2C%22expires%22:1710259419000}
Sec-Fetch-Dest: empty
Sec-Fetch-Mode: cors
Sec-Fetch-Site: same-origin
I'll appreciate any help or clues as to what might lead to such behaviour,
as I am utterly confused why only a few Items have such behaviour when
almost all of items in the repository have underwent the same procedures.
Thank you all!
Best regards
David Gerner
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