Hi,
I recently installed dspace version 3.1. It was working fine except problems
like upload of file in submissions was throwing exception:-
java.io.IOException: No such file or directory
at java.io.UnixFileSystem.createFileExclusively(Native Method)
The solution for it as was suggested in one of the blogs was to change the
dspace dir owner from <username> to 'tomcat'
I changed the ownership & goofed up with permissions.
After doing so, sudo was corrupted. (made it working later)
Later faced following exception after server startup and hitting the url:-
java.net.ConnectException: Connection refused
at java.net.PlainSocketImpl.socketConnect(Native Method)
at
java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:327)
Exception was due to stopped postgresql, made it working too.
But now I am facing following problem on hitting url: -
java.net.MalformedURLException: unknown protocol: resource
at java.net.URL.<init>(URL.java:592)
at java.net.URL.<init>(URL.java:482)
at java.net.URL.<init>(URL.java:431)
at
org.apache.cocoon.core.container.spring.avalon.SourceResource.getURL(SourceResource.java:97)
at
org.apache.cocoon.core.container.spring.avalon.ConfigurationReader.convertSitemap(ConfigurationReader.java:263)
at
org.apache.cocoon.core.container.spring.avalon.ConfigurationReader.readSitemap(ConfigurationReader.java:104)
at
org.apache.cocoon.core.container.spring.avalon.SitemapElementParser.readConfiguration(SitemapElementParser.java:99)
at
org.apache.cocoon.core.container.spring.avalon.BridgeElementParser.parse(BridgeElementParser.java:78)
at
org.springframework.beans.factory.xml.NamespaceHandlerSupport.parse(NamespaceHandlerSupport.java:73)
at
org.springframework.beans.factory.xml.BeanDefinitionParserDelegate.parseCustomElement(BeanDefinitionParserDelegate.java:1419)
at
org.springframework.beans.factory.xml.BeanDefinitionParserDelegate.parseCustomElement(BeanDefinitionParserDelegate.java:1409)
at
org.springframework.beans.factory.xml.DefaultBeanDefinitionDocumentReader.parseBeanDefinitions(DefaultBeanDefinitionDocumentReader.java:184)
at
org.springframework.beans.factory.xml.DefaultBeanDefinitionDocumentReader.doRegisterBeanDefinitions(DefaultBeanDefinitionDocumentReader.java:140)
at
org.springframework.beans.factory.xml.DefaultBeanDefinitionDocumentReader.registerBeanDefinitions(DefaultBeanDefinitionDocumentReader.java:111)
at
org.springframework.beans.factory.xml.XmlBeanDefinitionReader.registerBeanDefinitions(XmlBeanDefinitionReader.java:493)
at
org.springframework.beans.factory.xml.XmlBeanDefinitionReader.doLoadBeanDefinitions(XmlBeanDefinitionReader.java:390)
at
org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDefinitions(XmlBeanDefinitionReader.java:334)
at
org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDefinitions(XmlBeanDefinitionReader.java:302)
at
org.apache.cocoon.spring.configurator.impl.ChildXmlWebApplicationContext.loadBeanDefinitions(ChildXmlWebApplicationContext.java:82)
at
org.springframework.web.context.support.XmlWebApplicationContext.loadBeanDefinitions(XmlWebApplicationContext.java:94)
at
org.springframework.context.support.AbstractRefreshableApplicationContext.refreshBeanFactory(AbstractRefreshableApplicationContext.java:131)
at
org.springframework.context.support.AbstractApplicationContext.obtainFreshBeanFactory(AbstractApplicationContext.java:522)
at
org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:436)
at
org.apache.cocoon.core.container.spring.avalon.SitemapHelper.createContainer(SitemapHelper.java:317)
at
org.apache.cocoon.components.treeprocessor.sitemap.SitemapLanguage.build(SitemapLanguage.java:343)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at
org.apache.cocoon.core.container.spring.avalon.PoolableProxyHandler.invoke(PoolableProxyHandler.java:71)
at sun.proxy.$Proxy24.build(Unknown Source)
at
org.apache.cocoon.components.treeprocessor.TreeProcessor.buildConcreteProcessor(TreeProcessor.java:413)
at
org.apache.cocoon.components.treeprocessor.TreeProcessor.setupConcreteProcessor(TreeProcessor.java:338)
at
org.apache.cocoon.components.treeprocessor.TreeProcessor.buildPipeline(TreeProcessor.java:259)
at
org.apache.cocoon.components.treeprocessor.sitemap.MountNode.invoke(MountNode.java:107)
at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:78)
at
org.apache.cocoon.components.treeprocessor.sitemap.SelectNode.invoke(SelectNode.java:87)
at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:55)
at
org.apache.cocoon.components.treeprocessor.sitemap.MatchNode.invoke(MatchNode.java:87)
at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:78)
at
org.apache.cocoon.components.treeprocessor.sitemap.PipelineNode.invoke(PipelineNode.java:143)
at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:78)
at
org.apache.cocoon.components.treeprocessor.sitemap.PipelinesNode.invoke(PipelinesNode.java:81)
at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process(ConcreteTreeProcessor.java:239)
at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.buildPipeline(ConcreteTreeProcessor.java:186)
at
org.apache.cocoon.components.treeprocessor.TreeProcessor.buildPipeline(TreeProcessor.java:260)
at
org.apache.cocoon.components.treeprocessor.sitemap.MountNode.invoke(MountNode.java:107)
at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:55)
at
org.apache.cocoon.components.treeprocessor.sitemap.MatchNode.invoke(MatchNode.java:87)
at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:78)
at
org.apache.cocoon.components.treeprocessor.sitemap.PipelineNode.invoke(PipelineNode.java:143)
at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:78)
at
org.apache.cocoon.components.treeprocessor.sitemap.PipelinesNode.invoke(PipelinesNode.java:81)
at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process(ConcreteTreeProcessor.java:239)
at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.buildPipeline(ConcreteTreeProcessor.java:186)
at
org.apache.cocoon.components.treeprocessor.TreeProcessor.buildPipeline(TreeProcessor.java:260)
at
org.apache.cocoon.components.source.impl.SitemapSource.init(SitemapSource.java:277)
at
org.apache.cocoon.components.source.impl.SitemapSource.<init>(SitemapSource.java:148)
at
org.apache.cocoon.components.source.impl.SitemapSourceFactory.getSource(SitemapSourceFactory.java:62)
at
org.apache.cocoon.components.source.CocoonSourceResolver.resolveURI(CocoonSourceResolver.java:153)
at
org.apache.cocoon.components.source.CocoonSourceResolver.resolveURI(CocoonSourceResolver.java:183)
at
org.apache.cocoon.generation.FileGenerator.setup(FileGenerator.java:99)
at
org.dspace.app.xmlui.cocoon.AspectGenerator.setup(AspectGenerator.java:81)
at sun.reflect.GeneratedMethodAccessor79.invoke(Unknown Source)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at
org.apache.cocoon.core.container.spring.avalon.PoolableProxyHandler.invoke(PoolableProxyHandler.java:71)
at sun.proxy.$Proxy26.setup(Unknown Source)
at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.setupPipeline(AbstractProcessingPipeline.java:343)
at
org.apache.cocoon.components.pipeline.impl.AbstractCachingProcessingPipeline.setupPipeline(AbstractCachingProcessingPipeline.java:710)
at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.preparePipeline(AbstractProcessingPipeline.java:466)
at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.prepareInternal(AbstractProcessingPipeline.java:480)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at
org.apache.cocoon.core.container.spring.avalon.PoolableProxyHandler.invoke(PoolableProxyHandler.java:71)
at sun.proxy.$Proxy25.prepareInternal(Unknown Source)
at
org.apache.cocoon.components.source.impl.SitemapSource.init(SitemapSource.java:292)
at
org.apache.cocoon.components.source.impl.SitemapSource.<init>(SitemapSource.java:148)
at
org.apache.cocoon.components.source.impl.SitemapSourceFactory.getSource(SitemapSourceFactory.java:62)
at
org.apache.cocoon.components.source.CocoonSourceResolver.resolveURI(CocoonSourceResolver.java:153)
at
org.apache.cocoon.components.source.CocoonSourceResolver.resolveURI(CocoonSourceResolver.java:183)
at
org.apache.cocoon.generation.FileGenerator.setup(FileGenerator.java:99)
at sun.reflect.GeneratedMethodAccessor79.invoke(Unknown Source)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at
org.apache.cocoon.core.container.spring.avalon.PoolableProxyHandler.invoke(PoolableProxyHandler.java:71)
at sun.proxy.$Proxy26.setup(Unknown Source)
at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.setupPipeline(AbstractProcessingPipeline.java:343)
at
org.apache.cocoon.components.pipeline.impl.AbstractCachingProcessingPipeline.setupPipeline(AbstractCachingProcessingPipeline.java:710)
at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.preparePipeline(AbstractProcessingPipeline.java:466)
at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.process(AbstractProcessingPipeline.java:411)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at
org.apache.cocoon.core.container.spring.avalon.PoolableProxyHandler.invoke(PoolableProxyHandler.java:71)
at sun.proxy.$Proxy25.process(Unknown Source)
at
org.apache.cocoon.components.treeprocessor.sitemap.SerializeNode.invoke(SerializeNode.java:147)
at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:55)
at
org.apache.cocoon.components.treeprocessor.sitemap.MatchNode.invoke(MatchNode.java:87)
at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:78)
at
org.apache.cocoon.components.treeprocessor.sitemap.PipelineNode.invoke(PipelineNode.java:143)
at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:78)
at
org.apache.cocoon.components.treeprocessor.sitemap.PipelinesNode.invoke(PipelinesNode.java:81)
at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process(ConcreteTreeProcessor.java:239)
at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process(ConcreteTreeProcessor.java:171)
at
org.apache.cocoon.components.treeprocessor.TreeProcessor.process(TreeProcessor.java:247)
at
org.apache.cocoon.components.treeprocessor.sitemap.MountNode.invoke(MountNode.java:117)
at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:55)
at
org.apache.cocoon.components.treeprocessor.sitemap.MatchNode.invoke(MatchNode.java:87)
at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:78)
at
org.apache.cocoon.components.treeprocessor.sitemap.PipelineNode.invoke(PipelineNode.java:143)
at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:78)
at
org.apache.cocoon.components.treeprocessor.sitemap.PipelinesNode.invoke(PipelinesNode.java:81)
at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process(ConcreteTreeProcessor.java:239)
at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process(ConcreteTreeProcessor.java:171)
at
org.apache.cocoon.components.treeprocessor.TreeProcessor.process(TreeProcessor.java:247)
at
org.apache.cocoon.components.treeprocessor.sitemap.MountNode.invoke(MountNode.java:117)
at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:78)
at
org.apache.cocoon.components.treeprocessor.sitemap.PipelineNode.invoke(PipelineNode.java:143)
at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:78)
at
org.apache.cocoon.components.treeprocessor.sitemap.PipelinesNode.invoke(PipelinesNode.java:81)
at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process(ConcreteTreeProcessor.java:239)
at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process(ConcreteTreeProcessor.java:171)
at
org.apache.cocoon.components.treeprocessor.TreeProcessor.process(TreeProcessor.java:247)
at
org.apache.cocoon.servlet.RequestProcessor.process(RequestProcessor.java:351)
at
org.apache.cocoon.servlet.RequestProcessor.service(RequestProcessor.java:169)
at
org.apache.cocoon.sitemap.SitemapServlet.service(SitemapServlet.java:84)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
at
org.apache.cocoon.servletservice.ServletServiceContext$PathDispatcher.forward(ServletServiceContext.java:468)
at
org.apache.cocoon.servletservice.ServletServiceContext$PathDispatcher.forward(ServletServiceContext.java:443)
at
org.apache.cocoon.servletservice.spring.ServletFactoryBean$ServiceInterceptor.invoke(ServletFactoryBean.java:264)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at sun.proxy.$Proxy22.service(Unknown Source)
at org.dspace.springmvc.CocoonView.render(CocoonView.java:113)
at
org.springframework.web.servlet.DispatcherServlet.render(DispatcherServlet.java:1180)
at
org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:950)
at
org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:852)
at
org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:882)
at
org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:778)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:617)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at
org.dspace.app.xmlui.cocoon.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:111)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at
org.dspace.app.xmlui.cocoon.DSpaceCocoonServletFilter.doFilter(DSpaceCocoonServletFilter.java:269)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at
org.dspace.app.xmlui.cocoon.servlet.multipart.DSpaceMultipartFilter.doFilter(DSpaceMultipartFilter.java:119)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at
org.dspace.utils.servlet.DSpaceWebappServletFilter.doFilter(DSpaceWebappServletFilter.java:78)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298)
at
org.apache.jk.server.JkCoyoteHandler.invoke(JkCoyoteHandler.java:190)
at
org.apache.jk.common.HandlerRequest.invoke(HandlerRequest.java:291)
at org.apache.jk.common.ChannelSocket.invoke(ChannelSocket.java:769)
at
org.apache.jk.common.ChannelSocket.processConnection(ChannelSocket.java:698)
at
org.apache.jk.common.ChannelSocket$SocketConnection.runIt(ChannelSocket.java:891)
at
org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:690)
at java.lang.Thread.run(Thread.java:679)
Also, after the goof up of permission & chown, I am unable to access the
server through putty (getting, software caused connection abort error, the
moment I try to connect to server)
Please help...
Thanks,
Abhishek
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