This may also help: http://wiki.lib.sun.ac.za/index.php/SUNScholar/Prepare_Ubuntu/S08#Step_8.5_Setup_Tomcat_server_permissions
*Hilton Gibson* Ubuntu Linux Systems Administrator JS Gericke Library Room 1025D Stellenbosch University Private Bag X5036 Stellenbosch 7599 South Africa Tel: +27 21 808 4100 | Cell: +27 84 646 4758 http://scholar.sun.ac.za http://bit.ly/goodir http://library.sun.ac.za http://za.linkedin.com/in/hiltongibson On 31 March 2014 19:17, Stefanie Behnke <[email protected]> wrote: > Dear Anja, > > after checking all subdirecteries and changing the access rights to > "tomcat7" instead of "root" the uploading works. > > Thank you very much, I would not have found it out myself! > > Best regards > Stefanie > > -----Ursprüngliche Nachricht----- > Von: Anja Le Blanc [mailto:[email protected]] > Gesendet: Montag, 31. März 2014 16:34 > An: Stefanie Behnke; [email protected] > Betreff: Re: AW: AW: [Dspace-tech] Problem with bitstream upload > > Hi Stefanie, > > In the log4j.properties file add a line > log4j.logger.org.dspace.storage.bitstore=DEBUG, A1 > > That should change the log level for that java package only (after a > restart > of tomcat). > > You said the owner of the directory is tomcat7. Have you also checked that > tomcat7 can read and write to all subdirectories of assetstore? > > Best regards, > Anja > > > > On 31/03/2014 15:17, Stefanie Behnke wrote: > > Dear Anja, > > > > thanks for your interest. > > > > a) assetstore.incoming is not set, so I think it is 0 (zero) and > > corresponds to the 'assetstore.dir' above: > > # Asset (bitstream) store number 0 (zero) assetstore.dir = > > ${dspace.dir}/assetstore > > > > b) the owner of that directory is "tomcat7" > > > >> You could also switch to log4j to debug mode for package > > org.dspace.storage.bitstore > > How can I do this? > > > > Thanks again for your help. > > > > Best regards > > Stefanie > > > > > > > > -----Ursprüngliche Nachricht----- > > Von: Anja Le Blanc [mailto:[email protected]] > > Gesendet: Montag, 31. März 2014 15:44 > > An: Stefanie Behnke; [email protected] > > Betreff: Re: AW: [Dspace-tech] Problem with bitstream upload > > > > Hi Stefanie, > > > > Well, the error simply said that it can't create a file. > > At that point the code tries to create a file in the current assetstore. > > Could you check in your dspace.cfg > > a) whether "assetstore.incoming" is set > > b) the location of assetstore.dir or asetstore.dir.[the number from > > a)] > > > > Check the permission of that directory tree -- the tomcat user must be > > able to access that. > > > > You could also switch to log4j to debug mode for package > > org.dspace.storage.bitstore -- this would produce a line in dspace.log > > with the info of where it tries do create the file: > > log.debug("Local filename for " + sInternalId + " is > > "+bufFilename.toString()); > > > > That is all I could think of for that. > > > > Regards, > > Anja > > > > > > On 31/03/2014 13:56, Stefanie Behnke wrote: > >> Dear Anja, > >> > >> error message on the screen: > >> Internal System Error > >> > >> The system has experienced an internal error. Please try to do what > >> you were doing again, and if the problem persists, please contact us > >> so we can fix the problem. > >> > >> ------ > >> from the dspace log: > >> > >> 2014-03-31 14:41:52,827 INFO > >> org.dspace.authenticate.LDAPAuthentication @ > >> > > > anonymous:session_id=C1E9A7CC860353716D89DBFFEBDEFDCF:ip_addr= > 129.27.218.38: > >> auth:attempting trivial auth of [email protected] > >> 2014-03-31 14:41:52,953 WARN > >> org.dspace.authenticate.LDAPAuthentication @ > >> > > > anonymous:session_id=C1E9A7CC860353716D89DBFFEBDEFDCF:ip_addr= > 129.27.218.38: > >> ldap_authentication:type=failed_auth > >> javax.naming.AuthenticationException\colon; [LDAP\colon; error code > >> 49 > >> - Invalid Credentials] > >> 2014-03-31 14:41:52,953 INFO > >> org.dspace.authenticate.PasswordAuthentication > >> @ > >> > > > anonymous:session_id=C1E9A7CC860353716D89DBFFEBDEFDCF:ip_addr= > 129.27.218.38: > >> authenticate:attempting password auth of [email protected] > >> 2014-03-31 14:41:52,973 INFO > >> org.dspace.authenticate.PasswordAuthentication > >> @ > >> [email protected]:session_id=C1E9A7CC860353716D89DBFFEBDEFDCF:ip_addr > >> = > >> 129.27 .218.38:authenticate:type=PasswordAuthentication > >> 2014-03-31 14:41:52,976 INFO > >> org.dspace.app.webui.servlet.PasswordServlet @ > >> [email protected]:session_id=C1E9A7CC860353716D89DBFFEBDEFDCF:ip_addr > >> = > >> 129.27 > >> .218.38:login:type=explicit > >> 2014-03-31 14:41:53,003 INFO > >> org.dspace.app.webui.servlet.MyDSpaceServlet @ > >> [email protected]:session_id=03F65560962C60325F4784644FF62FD5:ip_addr > >> = > >> 129.27 > >> .218.38:view_mydspace: > >> 2014-03-31 14:42:22,390 INFO org.dspace.content.Bitstream @ > >> [email protected]:session_id=03F65560962C60325F4784644FF62FD5:ip_addr > >> = > >> 129.27 > >> .218.38:update_bitstream:bitstream_id=6477 > >> 2014-03-31 14:42:22,390 INFO org.dspace.content.Bundle @ > >> [email protected]:session_id=03F65560962C60325F4784644FF62FD5:ip_addr > >> = > >> 129.27 > >> .218.38:update_bundle:bundle_id=4273 > >> 2014-03-31 14:42:22,393 INFO org.dspace.content.Item @ > >> [email protected]:session_id=03F65560962C60325F4784644FF62FD5:ip_addr > >> = > >> 129.27 > >> .218.38:update_item:item_id=4282 > >> 2014-03-31 14:42:31,039 WARN > >> org.dspace.app.webui.servlet.InternalErrorServlet @ > >> :session_id=03F65560962C60325F4784644FF62FD5:internal_error:-- URL Was: > >> http://129.27.218.243:8080/jspui/tools/edit-item > >> -- Method: POST > >> -- Parameters were: > >> > >> java.io.IOException: No such file or directory > >> at java.io.UnixFileSystem.createFileExclusively(Native Method) > >> at java.io.File.createNewFile(File.java:947) > >> at > >> edu.sdsc.grid.io.local.LocalFile.createNewFile(LocalFile.java:486) > >> at > >> org.dspace.storage.bitstore.BitstreamStorageManager.store(BitstreamSt > >> o > >> rageMa > >> nager.java:300) > >> at org.dspace.content.Bitstream.create(Bitstream.java:205) > >> at org.dspace.content.Bundle.createBitstream(Bundle.java:384) > >> at > >> org.dspace.app.webui.servlet.admin.EditItemServlet.processUploadBitst > >> r > >> eam(Ed > >> itItemServlet.java:857) > >> at > >> > > > > org.dspace.app.webui.servlet.admin.EditItemServlet.doDSPost(EditItemServlet. > >> java:160) > >> at > >> org.dspace.app.webui.servlet.DSpaceServlet.processRequest(DSpaceServl > >> e > >> t.java > >> :115) > >> at > >> org.dspace.app.webui.servlet.DSpaceServlet.doPost(DSpaceServlet.java:73) > >> at javax.servlet.http.HttpServlet.service(HttpServlet.java:641) > >> at javax.servlet.http.HttpServlet.service(HttpServlet.java:722) > >> at > >> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Appl > >> i > >> cation > >> FilterChain.java:305) > >> at > >> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationF > >> i > >> lterCh > >> ain.java:210) > >> at > >> org.dspace.app.webui.filter.RegisteredOnlyFilter.doFilter(RegisteredO > >> n > >> lyFilt > >> er.java:66) > >> at > >> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Appl > >> i > >> cation > >> FilterChain.java:243) > >> at > >> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationF > >> i > >> lterCh > >> ain.java:210) > >> at > >> org.dspace.utils.servlet.DSpaceWebappServletFilter.doFilter(DSpaceWeb > >> a > >> ppServ > >> letFilter.java:78) > >> at > >> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Appl > >> i > >> cation > >> FilterChain.java:243) > >> at > >> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationF > >> i > >> lterCh > >> ain.java:210) > >> at > >> org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperV > >> a > >> lve.ja > >> va:225) > >> at > >> org.apache.catalina.core.StandardContextValve.invoke(StandardContextV > >> a > >> lve.ja > >> va:123) > >> at > >> org.apache.catalina.authenticator.AuthenticatorBase.invoke(Authentica > >> t > >> orBase > >> .java:472) > >> at > >> org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.j > >> a > >> va:168 > >> ) > >> at > >> > > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.ja > > va:98) > >> at > >> > org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927) > >> at > >> org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineVal > >> v > >> e.java > >> :118) > >> at > >> > > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java > > :407) > >> at > >> org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp > >> 1 > >> 1Proce > >> ssor.java:1001) > >> at > >> org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process( > >> A > >> bstrac > >> tProtocol.java:579) > >> at > >> > > > > org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java: > >> 312) > >> at > >> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor. > >> j > >> ava:11 > >> 45) > >> at > >> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor. > >> java:6 > >> 15) > >> at java.lang.Thread.run(Thread.java:722) > >> 2014-03-31 14:42:31,056 WARN org.dspace.app.webui.util.UIUtil @ > >> Unable to send email alert > >> javax.mail.internet.AddressException: Illegal address in string ``'' > >> at > >> javax.mail.internet.InternetAddress.<init>(InternetAddress.java:94) > >> at org.dspace.core.Email.send(Email.java:302) > >> at org.dspace.app.webui.util.UIUtil.sendAlert(UIUtil.java:419) > >> at > >> org.dspace.app.webui.servlet.InternalErrorServlet.doGet(InternalError > >> S > >> ervlet > >> .java:54) > >> at > >> org.dspace.app.webui.servlet.InternalErrorServlet.doPost(InternalErro > >> r > >> Servle > >> t.java:62) > >> at javax.servlet.http.HttpServlet.service(HttpServlet.java:641) > >> at javax.servlet.http.HttpServlet.service(HttpServlet.java:722) > >> at > >> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Appl > >> i > >> cation > >> FilterChain.java:305) > >> at > >> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationF > >> i > >> lterCh > >> ain.java:210) > >> at > >> > > > > org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher. > >> java:690) > >> at > >> org.apache.catalina.core.ApplicationDispatcher.processRequest(Applica > >> t > >> ionDis > >> patcher.java:479) > >> at > >> org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationD > >> i > >> spatch > >> er.java:402) > >> at > >> org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDis > >> p > >> atcher > >> .java:329) > >> at > >> org.apache.catalina.core.StandardHostValve.custom(StandardHostValve.j > >> a > >> va:453 > >> ) > >> at > >> > > > > org.apache.catalina.core.StandardHostValve.throwable(StandardHostValve.java: > >> 399) > >> at > >> org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.j > >> a > >> va:191 > >> ) > >> at > >> > > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.ja > > va:98) > >> at > >> > org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927) > >> at > >> org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineVal > >> v > >> e.java > >> :118) > >> at > >> > > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java > > :407) > >> at > >> org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp > >> 1 > >> 1Proce > >> ssor.java:1001) > >> at > >> org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process( > >> A > >> bstrac > >> tProtocol.java:579) > >> at > >> > > > > org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java: > >> 312) > >> at > >> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor. > >> j > >> ava:11 > >> 45) > >> at > >> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor. > >> java:6 > >> 15) > >> at java.lang.Thread.run(Thread.java:722) > >> --------- > >> > >> > >> > >> -----Ursprüngliche Nachricht----- > >> Von: Anja Le Blanc [mailto:[email protected]] > >> Gesendet: Montag, 31. März 2014 12:35 > >> An: [email protected] > >> Betreff: Re: [Dspace-tech] Problem with bitstream upload > >> > >> Hi Stefanie, > >> > >> That is really not a lot of information about your problem. Can you > >> check for error messages in your DSpace and or Tomcat logs? > >> > >> Regards, > >> > >> Anja > >> > >> > >> On 31/03/2014 09:52, Stefanie Behnke wrote: > >>> Dear all, > >>> > >>> I am using Dspace 3.1 with jspui and want to upload a bitstream (zip > >>> file) > >> to an existing item. That results in an Internal System Error. > >>> > >>> Can anyone give me a hint, what went wrong? > >>> > >>> thanking you in advance > >>> Stefanie > >>> > >>> > >>> -------------------------------------------------------------------- > >>> - > >>> - > >>> -------- _______________________________________________ > >>> DSpace-tech mailing list > >>> [email protected] > >>> https://lists.sourceforge.net/lists/listinfo/dspace-tech > >>> List Etiquette: > >>> https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette > >>> > >>> > >> > >> --------------------------------------------------------------------- > >> - > >> ------ > >> -- > >> _______________________________________________ > >> DSpace-tech mailing list > >> [email protected] > >> https://lists.sourceforge.net/lists/listinfo/dspace-tech > >> List Etiquette: > >> https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette > >> > >> > >> > > > > > > > > > > ------------------------------------------------------------------------------ > _______________________________________________ > DSpace-tech mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/dspace-tech > List Etiquette: > https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette >
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