Re: [DuMuX] Problems with test_richards_box_parallel

Bernd Flemisch Mon, 05 Mar 2018 03:26:05 -0800

Ok, this already doesn't seem to be one parallel grid, but rather twosequential ones. Can you delete the folders build-cmake in dune-common,dune-geometry, dune-grid, rerun dunecontrol with --module=dune-grid andperform the YaspGrid test again? And post the file config.h fromdune-grid/build-cmake?


Kind regards
Bernd




On 03/05/2018 12:16 PM, Daniel Leitner wrote:

Hallo,

ich habe den Output in die Email kopiert.

Beste Grüße,

Daniel


Output:
daniel@Simwerk-K7:~/workspace/DUMUX/dune-grid/build-cmake/dune/grid/test/yasp$mpirun -n 2 ./test-yaspgrid-yaspfactory-1d
 using equidistant coordinate container!

 using equidistant coordinate container!


YaspGrid<1
YaspGrid<1>>20000000
20000000
200020000000
Lifetime / consistency check for entities, codim 1
WARNING! Requested check of first 32 entities, but grid view onlycontains 9 entities
0000
Lifetime / consistency check for entities, codim 1
WARNING! Requested check of first 32 entities, but grid view onlycontains 9 entities
Lifetime / consistency check for entities, codim 0
WARNING! Requested check of first 32 entities, but grid view onlycontains 8 entities
Intersection Lifetime / consistency check
WARNING! Requested check of intersections for first 32 elements, butgrid view only contains 8 elements
Lifetime / consistency check for entities, codim 0
WARNING! Requested check of first 32 entities, but grid view onlycontains 8 entities
Intersection Lifetime / consistency check
WARNING! Requested check of intersections for first 32Lifetime /consistency check for entities, codim 1WARNING! Requested check of first 32 entities, but grid view onlycontains 9 entities
 elements, but grid view only contains 8 elements
Lifetime / consistency check for entities, codim 0
WARNING! Requested check of first 32 entities, but grid view onlycontains 8 entities
Intersection Lifetime / consistency check
WARNING! Requested check of intersections for first 32 elements, butgrid view only contains 8 elements
Lifetime / consistency check for entities, codim 1
WARNING! Requested check of first 32 entities, but grid view onlycontains 9 entities
Lifetime / consistency check for entities, codim 0
WARNING! Requested check of first 32 entities, but grid view onlycontains 8Checking iterators for higher codimension...
Checking iterators for higher codimension...
TEST Leaf communication for codim  entities
Intersection Lifetime / consistency check
WARNING! Requested check of intersections for first 32 elements, butgrid view only contains 8 elements
1
Checking iterators for higher codimension...
Checking iterators for higher codimension...
TEST Leaf communication for codim 0
TEST Level<0> communication for codim 1
TEST Level<TEST Leaf communication for codim 1
0> communication for codim 0
TEST Leaf communication for codim 0
TEST Level<0> communication for codim 1
Checking codim 0
Entity of codim 0 at TEST Level<0> communication for codim 0
Checking codim 0
Entity of codim 0 at 0.0625 with partition interior and 0 / 0.0625with partition interior and 0 / 0 writes / reads
Entity of codim 0 at 0 writes / reads
Entity of codim 0 at 0.1875 with partition interior and 0 / 00.1875with partition interior and 0 / 0 writes / reads
 writes / reads
Entity of codim 0 at 0.3125 with partition interior and 0 / 0 writes /readsEntity of codim 0 at 0.3125 with partition interior and 0 / Entity ofcodim 0 at 0.4375 with partition interior and 0 / 0 writes / reads
Entity of codim 0 at 0 writes / reads
Entity of codim 0 at 0.4375 with partition interior and 0 / 0 writes /reads0.5625 with partition interior and 0 / 0 writes / reads
Entity of codim 0 at
Entity of codim 0 at 0.5625 with partition interior0.6875 withpartition and 0 / 0 writes / reads
Entity of codim 0 at interior and 0 / 0 writes / reads
Entity of codim 0 at 0.6875 with partition interior and 0 / 0.8125with partition interior and 0 / 0 writes / reads
Entity of codim 0 at 0 writes / reads
Entity of codim 0 at 0.93750.8125 with partition interior and 0 / 0writes / reads with partition interior and 0 / 0 writes / reads
Entity of codim 0 at 0.9375Checking codim 1
 with partition interior and 0 / 0 writes / reads
Checking codim 1
Entity of codim 1 at 0 with partition interior and 0 / Entity of codim1 at 0 with partition interior and 0 / 0 writes / reads
0 writes / reads
Entity of codim 1 at 0.125 with partition interior and 0 / 0 writes /readsEntity of codim 1Entity of codim 1 at 0.125 with partition interiorand at 0.25 with partition interior and 0 / 0 writes / reads0 / 0writes / reads
Entity of codim 1
Entity of codim 1 at 0.375 with partition interior at 0.25 and 0 / 0writes / reads with partition interior and 0 / 0
Entity of codim 1 at  writes / reads
Entity of codim 1 at 0.5 with partition interior and 0 / 0.375 withpartition interior and 0 writes / readsEntity of codim 1 at 0.625 with partition interior and 0 / 0 writes /readsEntity of codim 1 at 0.75 with partition interior and 0 / 0 writes /reads
0 / 0 writes / reads
Entity of codim 1 at 0.5 with partition interior and 0 / 0 writes /readsEntity of codim 1 at 0.875 with partition interior and 0 / 0writes / reads
Entity of codim 1
Entity of codim 1 at 0.625 with partition interior and 0 / at 1 withpartition interior and 00 writes / readsEntity of codim 1 at 0.75 with partition SKIPPING checkgeometryInFather(), because grid has only one level!
 / 0 writes / reads
interior and 0 / 0 writes / reads
Entity of codim 1 at 0.875 with partition interior and 0 / 0 writes /readsEntity of codim 1 at 1 with partition interior and 0 / 0Checkingiterators for interior partition...
 writes / reads
SKIPPING check geometryInFather(), because grid has only one level!
Checking iterators for interior-border partition...
Checking iterators for interior partition...
Checking iterators for overlap partition...
Checking iterators for interior-border partition...
Checking iterators for overlap-front partition...
Checking iterators for ghost partition...
Checking iterators for overlap partition...
Checking communication for interior-border / interior-border interface...
Checking communication for interior-border / all interface...
Checking communication for overlap / overlap-front interface...
Checking communication for overlap / all interface...
Checking communication for all / all interface...Checking iteratorsfor overlap-front partition...
Checking iterators for ghost partition...
Checking communication for interior-border / interior-border interface...
Checking communication for interior-border / all interface...
Checking communication for overlap / overlap-front interface...
Checking communication for overlap / all interface...
Checking communication for all / all interface...
 using equidistant coordinate container with non-zero origin!

 using equidistant coordinate container with non-zero origin!


YaspGrid<1>
YaspGrid<1>20000000
20000000
Lifetime / consistency check for entities, codim 1
WARNING! Requested check of first 32 entities, but grid view onlycontains 9 entities
Lifetime / consistency check for entities, codim 0
WARNING! Requested check of first 32 entities, but grid view onlycontains 8 entities20000000
Intersection Lifetime / consistency check
WARNING! Requested check of intersections for first 32 elements, butgrid view only contains 8 elements
20000000
Lifetime / consistency check for entities, codim 1
WARNING! Requested check of first 32Lifetime / consistency check forentities, codim 1WARNING! Requested check of first 32 entities, but grid view onlycontains 9 entities
 entities, but grid view only contains 9 entities
Lifetime / consistency check for entities, codim 0
WARNING! Requested check of first 32 entities, but grid view onlycontains 8 entities
Intersection Lifetime / consistency check
WARNING! Requested check of intersections for first 32 elements, butgrid view only contains 8Lifetime / consistency check for entities,codim 0WARNING! Requested check of first 32 entities, but grid view onlycontains 8 entities elements
Checking iterators for higher codimension...
Checking iterators for higher codimension...
TEST Leaf communication for codim 1

Intersection Lifetime / consistency check
WARNING! Requested check of intersections for first 32 elements, butgrid view only contains 8 elements
Lifetime / consistency check for entities, codim 1
WARNING! Requested check of first 32 entities, but grid view onlycontains 9TEST Leaf communication for codim 0
TEST Level<0> communication for codim 1
 entities
Lifetime / consistency check for entities, codim 0
WARNING! Requested check of first 32 entities, but grid view onlycontains 8 entities
Intersection Lifetime / consistency check
WARNING! Requested check of intersections for first 32 elements, butgrid view only contains 8 elements
TEST Level<0> communication for codim 0
Checking codim 0
Entity of codim 0 at Checking iterators for higher codimension...
Checking iterators for higher codimension...
-0.875 with partition interior and 0 / 0 writes / reads
Entity of codim 0 at -0.625 with partition interior and 0 / 0 writes /reads
Entity of codim 0 at TEST Leaf communication for codim 1
TEST Leaf communication for codim -0.375 with partition interior and 0/ 0 writes / readsEntity of codim 0 at -0.125 with partition interior and 0 / 0 writes /reads
Entity of codim 00
TEST Level<0> communication for codim 1 at 0.125 with partitioninterior and 0 / 0 writes / reads
Entity of codim 0 at 0.375 with partition interior and
TEST Level<0> communication for codim 00 / 0 writes / reads
Entity of codim 0 at 0.625 with partition interior and
Checking codim 0
0 / 0 writes / reads
Entity of codim 0 at 0.875 with partition interior and 0 / 0Entity ofcodim 0 at writes / reads
Checking codim 1
-0.875 with partition interior and 0 / 0 writes / reads
Entity of codim 0 at -0.625 with partition interior and 0 / 0Entity ofcodim 1 at -1 with partition interior and 0 / 0 writes / reads
Entity of codim 1 at -0.75 with partition interior and 0 writes / reads
Entity of codim 0 at -0.375 with partition interior and / 0 writes /readsEntity of codim 1 at -0.5 with partition interior and 00 / 0 writes /reads
Entity of codim 0 at  / 0 writes / reads
Entity of codim 1-0.125 with partition interior and 0 / 0 writes / reads
Entity of codim 0 at at -0.25 with partition interior and 0 / 0writes / reads0.125 with partition interior and 0 / Entity of codim 1 at 0 withpartition interior and 0 / 0 writes / reads0 writes / reads
Entity of codim 0 at 0.375 with partition interior and 0 /
Entity of codim 1 at 0 writes / reads
Entity of codim 0 at 0.625 with partition interior and 0 / 0 writes /reads0.25 with partition interior and 0 / 0 writes / reads
Entity of codim 1 at 0.5 with partition interior and 0 / 0 writes / reads
Entity of codim 1 at 0.75 with partition interior
Entity of codim 0 at 0.875 with partition interior and 0 / 0 writes /reads
Entity of codim 1 at 1 with partition  and 0 / 0 writes / reads
Checking codim 1
interior and 0 / 0 writes / reads
Entity of codim 1 at -1 with partition interior and 0 / 0SKIPPINGcheck geometryInFather(), because grid has only one level!
 writes / reads
Entity of codim 1 at -0.75 with partition interior and 0 / 0 writes /reads
Entity of codim 1 at Checking iterators for interior partition...
-0.5 with partition interior and 0 / 0 writes / reads
Entity of codim 1 at -0.25 with partition interiorChecking iteratorsfor interior-border partition...
 and 0 / 0 writes / reads
Entity of codim 1 at 0 with partition interior and 0 / 0 writes / reads
Entity of codim 1 at 0.25Checking iterators for overlap partition...
 with partition interior and 0 / 0 writes / reads
Entity of codim 1Checking iterators for overlap-front partition...
at 0.5 with partition interior and 0 / 0Checking iterators for ghostpartition...
 writes / reads
Entity of codim 1 at 0.75 with partition interior and Checkingcommunication for interior-border / interior-border interface...
Checking communication for interior-border / all interface...
0 / 0 writes / reads
Entity of codim 1 at Checking communication for overlap /overlap-front interface...
Checking communication for overlap / all interface...
1 with partition interior and 0 / 0 writes / reads
Checking communication for all / all interface...
SKIPPING check geometryInFather(), because grid has only one level!
Checking iterators for interior partition...
Checking iterators for interior-border partition...
Checking iterators for overlap partition...
Checking iterators for overlap-front partition...
Checking iterators for ghost partition...
Checking communication for interior-border / interior-border interface...
Checking communication for interior-border / all interface...
Checking communication for overlap / overlap-front interface...
Checking communication for overlap / all interface...
Checking communication for all / all interface...
 using tensorproduct coordinate container!


YaspGrid<1>20000000
20000000
Lifetime / consistency check for entities, codim 1
WARNING! Requested check of first 32 entities, but grid view onlycontains 9 entities
Lifetime / consistency check for entities, codim 0
WARNING! Requested check of first 32 entities, but grid view onlycontains 8 entities
Intersection Lifetime / consistency check
WARNING! Requested check of intersections for first 32 elements, butgrid view only contains 8 elements
Lifetime / consistency check for entities, codim 1
WARNING! Requested check of first 32 entities, but grid view onlycontains 9 entities
Lifetime / consistency check for entities, codim 0
WARNING! Requested check of first 32 entities, but grid view onlycontains 8 entities
Intersection Lifetime / consistency check
WARNING! Requested check of intersections for first 32 elements, butgrid view only contains 8 elements
Checking iterators for higher codimension...
Checking iterators for higher codimension...
TEST Leaf communication for codim 1
TEST Leaf communication for codim 0
TEST Level<0> communication for codim 1 using tensorproduct coordinatecontainer!
TEST Level<0> communication for codim 0
Checking codim 0
Entity of codim 0 at -0.75 with partition interior and 0 / 0 writes /readsEntity of codim 0 at -0.375 with partition interior and 0 / 0 writes /readsEntity of codim 0 at -0.1875 with partition interior and 0 / 0 writes/ readsEntity of codim 0 at -0.0625 with partition interior and 0 / 0 writes/ reads
Entity of codim 0 at 0.0625 with partition
YaspGrid<1>interior and 0 / 0 writes / reads
Entity of codim 0 at 0.1875 with partition interior and 0 / 0 writes /readsEntity of codim 0 at 0.375 with partition interior and 0 / 0 writes /readsEntity of codim 0 at 0.75 with partition interior and 0 / 0 writes /reads
Checking codim 1
Entity of codim 1 at -1 with partition interior and 0 / 0 writes / reads
Entity of codim 1 at -0.5 with partition interior and 0 / 0 writes /readsEntity of codim 1 at -0.25 with partition interior and 0 / 0 writes /readsEntity of codim 1 at -0.125 with partition interior and 0 / 0 writes /readsEntity of codim 1 at 0 with partition interior and 0 / 2000000 writes/ readsEntity of codim 1 at 0.125 with partition interior and 0 / 0 writes /reads
Entity of codim 00
1 at 0.25 with partition interior and 0 / 0 writes / reads
Entity of codim 1 at 0.5 with partition interior and 0 / 0 writes / reads
Entity of codim 1 at 1 with partition interior and 020000000
Lifetime / consistency check for entities, codim 1
 / 0 writes / reads
WARNING! Requested check of first 32 entities, but grid view onlycontains 9 entities
SKIPPING check geometryInFather(), because grid has only one level!
Checking iterators for interior partition...
Lifetime / consistency check for entities, codim 0
WARNING! Requested check of first 32 entities, but grid view onlycontains 8 entities
Intersection Lifetime / consistency check
WARNING! Requested check of intersections for first 32 elements, butgrid view only contains 8 elements
Checking iterators for interior-border partition...
Checking iterators for overlap partition...Lifetime / consistencycheck for entities, codim 1WARNING! Requested check of first 32 entities, but grid view onlycontains 9 entities
Lifetime / consistency check for entities, codim 0
WARNING! Requested check of first 32Checking iterators foroverlap-front partition...
 entities, but grid view only contains 8 entities
Intersection Lifetime / consistency check
WARNING! Requested check of intersections for first 32 elements, butgrid view only contains 8 elements
Checking iterators for ghost partition...
Checking communication for interior-border / interior-border interface...
Checking communication for interior-border / all interface...
Checking iterators for higher codimension...
Checking iterators for higher codimension...
Checking communication for overlap / overlap-front interface...
TEST Leaf communication for codim 1
TEST Leaf communication for codim 0
TEST Checking communication for overlap / all interface...
Checking communication for all / all interface...
Level<0> communication for codim 1
TEST Level<0> communication for codim 0
Checking codim 0
Entity of codim 0 at -0.75 with partition interior and 0 / 0 writes /readsEntity of codim 0 at -0.375 with partition interior and 0 / 0 writes /readsEntity of codim 0 at -0.1875 with partition interior and 0 / 0 writes/ readsEntity of codim 0 at -0.0625 with partition interior and 0 / 0 writes/ readsEntity of codim 0 at 0.0625 with partition interior and 0 / 0 writes /readsEntity of codim 0 at 0.1875 with partition interior and 0 / 0 writes /readsEntity of codim 0 at 0.375 with partition interior and 0 / 0 writes /readsEntity of codim 0 at 0.75 with partition interior and 0 / 0 writes /reads
Checking codim 1
Entity of codim 1 at -1 with partition interior and 0 / 0 writes / reads
Entity of codim 1 at -0.5 with partition interior and 0 / 0 writes /readsEntity of codim 1 at -0.25 with partition interior and 0 / 0 writes /readsEntity of codim 1 at -0.125 with partition interior and 0 / 0 writes /reads
Entity of codim 1 at 0 with partition interior and 0 / 0 writes / reads
Entity of codim 1 at 0.125 with partition interior and 0 / 0 writes /readsEntity of codim 1 at 0.25 with partition interior and 0 / 0 writes /reads
Entity of codim 1 at 0.5 with partition interior and 0 / 0 writes / reads
Entity of codim 1 at 1 with partition interior and 0 / 0 writes / reads
SKIPPING check geometryInFather(), because grid has only one level!
Checking iterators for interior partition...
Checking iterators for interior-border partition...
Checking iterators for overlap partition...
Checking iterators for overlap-front partition...
Checking iterators for ghost partition...
Checking communication for interior-border / interior-border interface...
Checking communication for interior-border / all interface...
Checking communication for overlap / overlap-front interface...
Checking communication for overlap / all interface...
Checking communication for all / all interface...








Am 2018-03-05 um 12:06 schrieb Bernd Flemisch:
Hi Daniel,
we should check if your YaspGrid runs in parallel. Can you go todune-grid/build-cmake/dune/grid/test/yasp, type a
make test-yaspgrid-yaspfactory-1d
followed by something like
mpirun -n 2 ./test-yaspgrid-yaspfactory-1d
and post the output?

Kind regards
Bernd

On 02/28/2018 09:42 AM, Daniel Leitner wrote:
Hello,

please find attached the outputs,

Thanks,

Daniel


Am 2018-02-28 um 09:16 schrieb Bernd Flemisch:
Hi Daniel,

can you also provide the output of
make clean; make VERBOSE=1 test_richards_box
and of
ctest --verbose -R test_richards_box_parallel
?

Thank you. Kind regards
Bernd

On 02/28/2018 08:47 AM, Daniel Leitner wrote:
make test_richards_box


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Bernd Flemisch                         phone: +49 711 685 69162
IWS, Universität Stuttgart             fax:   +49 711 685 60430
Pfaffenwaldring 61            email: [email protected]
D-70569 Stuttgart            url: www.hydrosys.uni-stuttgart.de
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Re: [DuMuX] Problems with test_richards_box_parallel

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