Hello Jianwen, first thing you should adjust: use the same version for all modules. Your dune-function is 2.8 and dune-uggrid 2.9. This will cause problems, please go to master or better the 2.9.1 release. Further, do you really need OPM-Grid? I propose start without OPM-common and OPM-grid. Once everything is working, we can still help you to get these modules built.
For your actual UMFPack / SuiteSparse problem, I could not spot the problem. It is easier for me to get the config log as a plain text file.
Bye Christoph Dear DuMux developers,
Hope you are doing well.
I'm Jianwen, a PhD student from the University
of Arizona. I'm trying to install DuMux and met some errors. Would you be able to help me with the
installation? The following are the relevant information. Let me know if you need more details. I appreciate it if you could help me solve this installation problem.
Operating system: Ubuntu bash on Windows (WSL)
DuMux version: master
Obtained using git clone https://git.iws.uni-stuttgart.de/dumux-repositories/dumux.git
Dune version: master
Obtained by manually downloading from https://gitlab.dune-project.org/core Configure and build:
cd dumux
chmod +x ./dune-common/bin/dunecontrol
sudo ./dune-common/bin/dunecontrol
--opts=cmake.opts all
Error see below. The whole log file is attached.
cmake
-DCMAKE_MODULE_PATH="/home/janewendu/dumux/dune-common/cmake/modules;/home/janewendu/dumux/dune-geometry/cmake/modules;/home/janewendu/dumux/dune-grid/cmake/modules;/home/janewendu/dumux/dune-istl/cmake/modules;/home/janewendu/dumux/dune-localfunctions/cmake/modules"
-DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always
-fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3
-march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs
-Wcast-align -Wno-missing-braces -Wmissing-field-initializers
-Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra
-Wno-unused-parameter -Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO='
-fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow
-fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall
-Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces
-Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall'
-DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF -DSuiteSparse_INCLUDE_DIR=/usr/include/suitesparse
-DSuiteSparse_LIBRARY_DIR=/usr/lib/x86_64-linux-gnu
-DUNE_PYTHON_ALLOW_GET_PIP=ON -DDUNE_ENABLE_PYTHONBINDINGS=ON
-DBUILD_SHARED_LIBS=ON -DCMAKE_POSITION_INDEPENDENT_CODE=ON
"-Ddune-common_DIR=/home/janewendu/dumux/dune-common/build-cmake"
"-Ddune-geometry_DIR=/home/janewendu/dumux/dune-geometry/build-cmake"
"-Ddune-grid_DIR=/home/janewendu/dumux/dune-grid/build-cmake"
"-Dopm-common_DIR=/usr/lib/dunecontrol/opm-common/build-cmake"
"-Ddune-istl_DIR=/home/janewendu/dumux/dune-istl/build-cmake"
-DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always -fno-strict-aliasing
-fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native
-funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align
-Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare'
-DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra -Wno-unused-parameter
-Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO='
-fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only
-DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused
-Wmissing-include-dirs -Wcast-align -Wno-missing-braces
-Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall'
-DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF -DSuiteSparse_INCLUDE_DIR=/usr/include/suitesparse
-DSuiteSparse_LIBRARY_DIR=/usr/lib/x86_64-linux-gnu
-DUNE_PYTHON_ALLOW_GET_PIP=ON -DDUNE_ENABLE_PYTHONBINDINGS=ON
-DBUILD_SHARED_LIBS=ON -DCMAKE_POSITION_INDEPENDENT_CODE=ON
-DDUNE_OPTS_FILE="/home/janewendu/dumux/cmake.opts"
"/usr/lib/dunecontrol/opm-grid"
-- Could NOT find Valgrind (missing: VALGRIND_INCLUDE_DIR VALGRIND_PROGRAM)
CMake Deprecation Warning at
/usr/lib/dunecontrol/opm-common/cmake/Modules/OpmInit.cmake:26 (cmake_policy):
The OLD behavior for policy CMP0026 will be removed from a future
version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only
under
specific short-term circumstances. Projects should be ported to
the NEW
behavior and not rely on setting a policy to OLD.
Call Stack (most recent call first):
CMakeLists.txt:61 (OpmSetPolicies)
-- Found MPI: TRUE (found version "3.1")
-- Setting dune-common_LIBRARIES=Dune::Common
-- Found TBB: using configuration from
TBB_DIR=/usr/lib/x86_64-linux-gnu/cmake/TBB (found version
"2021.5.0")
-- Version 2.10.0 of dune-common from
/home/janewendu/dumux/dune-common/build-cmake
-- Setting dune-geometry_LIBRARIES=Dune::Geometry
-- Version 2.10.0 of dune-geometry from
/home/janewendu/dumux/dune-geometry/build-cmake
-- Dependencies for dune-geometry: dune-common (>= 2.10)
-- Setting dune-grid_LIBRARIES=Dune::Grid
-- Version 2.9.0 of dune-uggrid from
/usr/lib/x86_64-linux-gnu/cmake/dune-uggrid
-- Could not find UG. It seems to be not installed.
-- Version 2.10.0 of dune-grid from /home/janewendu/dumux/dune-grid/build-cmake
-- Setting dune-istl_LIBRARIES=Dune::ISTL
-- Found MPI: TRUE (found version "3.1") found components: C
CMake Error at
/usr/share/cmake-3.22/Modules/FindPackageHandleStandardArgs.cmake:230
(message):
Could NOT find SuiteSparse (missing: umfpack) (found version
"5.10.1")
Call Stack (most recent call first):
/usr/share/cmake-3.22/Modules/FindPackageHandleStandardArgs.cmake:594
(_FPHSA_FAILURE_MESSAGE)
/home/janewendu/dumux/dune-common/cmake/modules/FindSuiteSparse.cmake:211
(find_package_handle_standard_args)
/usr/lib/dunecontrol/opm-common/cmake/Modules/OpmFind.cmake:142
(find_package)
/usr/lib/dunecontrol/opm-common/cmake/Modules/OpmPackage.cmake:192
(find_and_append_package_to)
/usr/lib/dunecontrol/opm-common/cmake/Modules/OpmPackage.cmake:87
(find_package_deps)
/usr/lib/dunecontrol/opm-common/cmake/Modules/Finddune-istl.cmake:14
(find_opm_package)
/usr/lib/dunecontrol/opm-common/cmake/Modules/OpmFind.cmake:142
(find_package)
/usr/lib/dunecontrol/opm-common/cmake/Modules/OpmPackage.cmake:192
(find_and_append_package_to)
opm-grid-prereqs.cmake:32 (find_package_deps)
CMakeLists.txt:70 (include)
-- Configuring incomplete, errors occurred!
See also
"/usr/lib/dunecontrol/opm-grid/build-cmake/CMakeFiles/CMakeOutput.log".
See also
"/usr/lib/dunecontrol/opm-grid/build-cmake/CMakeFiles/CMakeError.log".
--- Failed to build opm-grid ---
Terminating dunecontrol due to previous errors!
Tried to solve by: Adding the following to the cmake.opts to specifying the paths to the SuiteSparse libraries and include files, but it doesn't help with solving the issue. -DSuiteSparse_INCLUDE_DIR=/usr/include/suitesparse
-DSuiteSparse_LIBRARY_DIR=/usr/lib/x86_64-linux-gnu
Many thanks for taking the time to look into this problem. Looking forward to your reply.
Sincerely, Jianwen -- Ph.D. student Hydrology and Atmospheric Sciences
University of Arizona
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