Having this as well on Lubuntu 16.04.

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https://bugs.launchpad.net/bugs/1297437

Title:
  warning "Application already exists, re-requesting properties"

Status in indicator-application package in Ubuntu:
  Fix Released

Bug description:
  Using current trusty (beta candidate), the indicator-application.log
  has warnings regularly logged

  "Application already exists, re-requesting properties"

  Backtrace of one of those

  #0  g_log (
      log_domain=log_domain@entry=0x804d9f6 "indicator-application-service", 
      log_level=log_level@entry=G_LOG_LEVEL_WARNING, 
      format=format@entry=0x804e328 "Application already exists, re-requesting 
properties.") at /build/buildd/glib2.0-2.39.92/./glib/gmessages.c:1067
  #1  0x0804c790 in application_service_appstore_application_add (
      appstore=0x99dac18, dbus_name=0x99e35a0 ":1.665", 
      dbus_object=0x99e6af0 "/org/ayatana/NotificationItem/tomboy_notes")
      at application-service-appstore.c:1009
  #2  0x0804d31c in _notification_watcher_server_register_status_notifier_item (
      appwatcher=0x99d3128, 
      service=0x99e6af0 "/org/ayatana/NotificationItem/tomboy_notes", 
      method=0x99e48f8) at application-service-watcher.c:254
  #3  0xb77490b6 in invoke_object_method (message=0x99e44a8, 
      connection=0x99dd7d8, 
      method=0x804ed1c <dbus_glib.notification_watcher_server_methods>, 
      object_info=0x804ed04 
<dbus_glib.notification_watcher_server_object_info>, 
      object=0x99d3128) at dbus-gobject.c:1899
  #4  object_registration_message (connection=0x99dd7d8, 
      message=message@entry=0x99e44a8, user_data=user_data@entry=0x99d34b0)
      at dbus-gobject.c:2161
  #5  0xb72572f8 in _dbus_object_tree_dispatch_and_unlock (tree=0x99ceec0, 
      message=message@entry=0x99e44a8, 
      found_object=found_object@entry=0xbfa0234c)
      at ../../dbus/dbus-object-tree.c:862
  #6  0xb724837d in dbus_connection_dispatch (
      connection=connection@entry=0x99dd7d8) at 
../../dbus/dbus-connection.c:4672
  #7  0xb7745f0d in message_queue_dispatch (source=source@entry=0x99e0118, 
      callback=0x0, user_data=0x0) at dbus-gmain.c:90
  #8  0xb74981e3 in g_main_dispatch (context=0x99d2a58, context@entry=0x99e0118)
      at /build/buildd/glib2.0-2.39.92/./glib/gmain.c:3064
  #9  g_main_context_dispatch (context=context@entry=0x99d2a58)
      at /build/buildd/glib2.0-2.39.92/./glib/gmain.c:3663
  #10 0xb7498468 in g_main_context_iterate (context=0x99d2a58, 
      block=block@entry=1, dispatch=dispatch@entry=1, self=<optimized out>)
      at /build/buildd/glib2.0-2.39.92/./glib/gmain.c:3734
  #11 0xb749876b in g_main_loop_run (loop=0x99d8390)
      at /build/buildd/glib2.0-2.39.92/./glib/gmain.c:3928

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