Hi Ken, all, First, the major bits:
>From my tests so far there is mostly a green light, I have been able to >goolf-build: * HPL-2.0-goolf-1.4.10.eb * OpenFOAM-2.1.1-goolf-1.4.10.eb * WRF-3.3.1-goolf-1.4.10-dmpar.eb * petsc4py-3.3-goolf-1.4.10-Python-2.7.3.eb On the downside, I had to fiddle with 'DOLFIN-1.0.0_GCC-4.7.patch' w/out success, since DOLFIN failed for me at the very last step (ie. its dependencies seem fine). See below for some info - I may not have time to debug this today, really. What is more of a feature than a bug is, that the robot now kicks-in automagically (-r parameter); to be honest, I like that and, it saves my day... let's keep it so :-) (is it a default config parameter perhaps? haven't searched into it, as of yet) On Mar 30, 2013, at 5:27 PM, Kenneth Hoste wrote: > Let me correct myself here: I had to tag a v1.3.0rc2 for easyblocks as well > just now, otherwise the dependency check on easyblocks performed by the > easyconfigs setup.py fails hard. OK, I think the idea that flew somewhere to release them as a single tarball, makes a lot of sense: let's not propagate this artificial repo fragmentation at the release milestone (I've never been too much in favor of a repo split, because we still need to test the 3 collections in sync-step, for coherence). Operationally, I think we do the right thing just not in the obvious way. fyi. Git has some kind of facility for sub-repos, I think that if it provides a hash that spans the 3 collections, that makes a lot of sense to have: 1 hash per release. > ps2. we have quite a few lib* packages that ended up in "devel" category... > let's fix it? > Which ones? Can you open a PR to the v1.3.0.x branch to fix them? https://github.com/hpcugent/easybuild-easyconfigs/pull/197 That PR is against "develop", but I suggest you guys have a quick look if you are happy with the current moduleclass categorization; (esp. for lib*) I am sure you will find some things you would rather like to tweak a bit. cheers, Fotis === about DOLFIN # with DOLFIN-1.0.0_GCC-4.7.patch it bails out with: == 2013-03-31 13:20:59,904 main.filetools ERROR EasyBuild crashed with an error (at easybuild/tools/filetools.py:307 in apply_patch): Can't determine patch level for patch /opt/apps/default/software/easybuild/1.3.0rc2/lib/python2.6/site-packages/easybuild_easyconfigs-1.3.0.0rc2-py2.6.egg/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.0.0_GCC-4.7.patch from directory /tmp/DOLFIN/1.0.0/goolf-1.4.10-Python-2.7.3/dolfin-1.0.0 # without DOLFIN-1.0.0_GCC-4.7.patch the following is visible in the -ld output: [...] -- Checking for package 'BLAS' -- [ /mnt/nfs/users/homedirs/fgeorgatos/.local/easybuild/software/CMake/2.8.4-goolf-1.4.10/share/cmake-2.8/Modules/FindBoost.cmake:454 ] boost 1.49.0 is already in the cache. To -- Performing Test MTL4_TEST_RUNS -- Performing Test MTL4_TEST_RUNS - Success -- Found MTL4: /opt/apps/HPCBIOS.20130301/software/MTL4/4.0.8878/include -- Checking for package 'PETSc' -- PETSC_DIR is /home/users/fgeorgatos/.local/easybuild/software/PETSc/3.3-p2-goolf-1.4.10-Python-2.7.3 -- PETSC_ARCH is empty -- Found petscconf.h -- PETSC_LIB -L/home/users/fgeorgatos/.local/easybuild/software/PETSc/3.3-p2-goolf-1.4.10-Python-2.7.3/lib -L/home/users/fgeorgatos/.local/easybuild/software/PETSc/3.3-p2-goolf-1. -- Unable to find library openblas -- Unable to find library gfortran -- PETSC_LIBRARIES /home/users/fgeorgatos/.local/easybuild/software/PETSc/3.3-p2-goolf-1.4.10-Python-2.7.3/lib/libpetsc.a;/home/users/fgeorgatos/.local/easybuild/software/ParMETIS -- Performing Test PETSC_TEST_RUNS -- Performing Test PETSC_TEST_RUNS - Success -- PETSc test runs -- Found PETSc: /home/users/fgeorgatos/.local/easybuild/software/PETSc/3.3-p2-goolf-1.4.10-Python-2.7.3/lib/libpetsc.a;/home/users/fgeorgatos/.local/easybuild/software/ParMETIS/4. -- Checking for package 'SLEPc' -- SLEPC_DIR is /home/users/fgeorgatos/.local/easybuild/software/SLEPc/3.3-p1-goolf-1.4.10-Python-2.7.3 -- Performing Test SLEPC_TEST_RUNS -- Performing Test SLEPC_TEST_RUNS - Success -- SLEPc test runs -- Found SLEPc: /home/users/fgeorgatos/.local/easybuild/software/SLEPc/3.3-p1-goolf-1.4.10-Python-2.7.3/lib/libslepc.a -- Checking for package 'CGAL' -- Performing Test CGAL_TEST_RUNS -- Performing Test CGAL_TEST_RUNS - Success -- Found CGAL: /home/users/fgeorgatos/.local/easybuild/software/CGAL/4.0-goolf-1.4.10-Python-2.7.3/lib/libCGAL.so;/usr/lib/libgmpxx.so;/usr/lib/libmpfr.so;/usr/lib/libgmp.so;/home -- Checking for package 'CPPUNIT' -- CPPUNIT could not be found. Be sure to set CPPUNIT_DIR. (missing: CPPUNIT_LIBRARIES CPPUNIT_INCLUDE_DIRS) -- Checking for package 'Sphinx' -- Found Sphinx: /home/users/fgeorgatos/.local/easybuild/software/Sphinx/1.1.3-goolf-1.4.10-Python-2.7.3/bin/sphinx-build (Required is at least version "1.0.7") -- -- The following optional packages were found: -- ------------------------------------------- -- (OK) OPENMP -- (OK) MPI -- (OK) PETSC -- (OK) SLEPC -- (OK) TRILINOS -- (OK) MTL4 -- (OK) UMFPACK -- (OK) CHOLMOD -- (OK) PARMETIS -- (OK) CGAL -- (OK) ZLIB -- (OK) PYTHON -- (OK) SPHINX -- -- The following optional packages could not be found: -- --------------------------------------------------- -- (**) SCOTCH -- CMake Error: File /tmp/DOLFIN/1.0.0/goolf-1.4.10-Python-2.7.3/dolfin-1.0.0/site-packages/dolfin/common/globalparameters.py.in does not exist. CMake Error at CMakeLists.txt:437 (configure_file): configure_file Problem configuring file CMake Error at CMakeLists.txt:494 (add_subdirectory): The source directory /tmp/DOLFIN/1.0.0/goolf-1.4.10-Python-2.7.3/dolfin-1.0.0/dolfin does not contain a CMakeLists.txt file. CMake Error at demo/CMakeLists.txt:11 (find_package): Could not find a configuration file for package dolfin. Set dolfin_DIR to the directory containing a CMake configuration file for dolfin. The file will have one of the following names: dolfinConfig.cmake dolfin-config.cmake Could not locate dolfin-config.cmake file. Did you do 'make install' for the DOLFIN library and set the appropriate paths (source <build_dir>/dolfin.conf)? CMake Error at CMakeLists.txt:586 (add_subdirectory): The source directory /tmp/DOLFIN/1.0.0/goolf-1.4.10-Python-2.7.3/dolfin-1.0.0/doc does not contain a CMakeLists.txt file. -- Configuring incomplete, errors occurred! == 2013-03-31 13:31:02,484 main.filetools DEBUG Using default regular expression: (?<![(,]|\w)(?:error|segmentation fault|failed)(?![(,]|\.?\w) == 2013-03-31 13:31:02,490 main.filetools INFO parseLogError msg: Command used: cmake -DCMAKE_INSTALL_PREFIX=/home/users/fgeorgatos/.local/easybuild/software/DOLFIN/1.0.0-goolf-1 == 2013-03-31 13:31:02,491 main.filetools INFO parseLogError (some may be harmless) regExp (?<![(,]|\w)(?:error|segmentation fault|failed)(?![(,]|\.?\w) found: -- Performing test SCOTCH_TEST_RUNS - Failed (0): ERROR: SCOTCH_dgraphInit: Scotch compiled with SCOTCH_PTHREAD and program not launched with MPI_THREAD_MULTIPLE -- Performing test SCOTCH_ZLIB_TEST_RUNS - Failed (0): ERROR: SCOTCH_dgraphInit: Scotch compiled with SCOTCH_PTHREAD and program not launched with MPI_THREAD_MULTIPLE CMake Error: File /tmp/DOLFIN/1.0.0/goolf-1.4.10-Python-2.7.3/dolfin-1.0.0/site-packages/dolfin/common/globalparameters.py.in does not exist. CMake Error at CMakeLists.txt:437 (configure_file): CMake Error at CMakeLists.txt:494 (add_subdirectory): CMake Error at demo/CMakeLists.txt:11 (find_package): CMake Error at CMakeLists.txt:586 (add_subdirectory): == 2013-03-31 13:31:02,491 main.filetools WARNING Found 9 errors in command output (output: -- Performing test SCOTCH_TEST_RUNS - Failed, (0): ERROR: SCOTCH_dgraphInit: Scotch com == 2013-03-31 13:31:02,492 main.EB_DOLFIN ERROR EasyBuild crashed with an error (at easybuild/easyblocks/d/dolfin.py:172 in configure_step): Optional packages could not be found, == 2013-03-31 13:31:02,492 main ERROR EasyBuild crashed with an error (at easybuild/tools/build_log.py:96 in exception): EasyBuild encountered an exception (at easybuild/main.py:8 Traceback (most recent call last): File "/home/users/fgeorgatos/.local/lib/python2.6/site-packages/easybuild_framework-1.3.0rc2-py2.6.egg/easybuild/main.py", line 806, in build_and_install_software regtest_online=options.regtest_online) File "/home/users/fgeorgatos/.local/lib/python2.6/site-packages/easybuild_framework-1.3.0rc2-py2.6.egg/easybuild/framework/easyblock.py", line 1721, in run_all_steps self.run_step(stop_name, step_methods, skippable=skippable) File "/home/users/fgeorgatos/.local/lib/python2.6/site-packages/easybuild_framework-1.3.0rc2-py2.6.egg/easybuild/framework/easyblock.py", line 1604, in run_step m(self) File "/home/users/fgeorgatos/.local/lib/python2.6/site-packages/easybuild_framework-1.3.0rc2-py2.6.egg/easybuild/framework/easyblock.py", line 1655, in <lambda> configure_step_spec = ('configure', 'configuring', [lambda x: x.configure_step()], True) File "/home/users/fgeorgatos/.local/lib/python2.6/site-packages/easybuild_easyblocks-1.3.0rc1-py2.6.egg/easybuild/easyblocks/d/dolfin.py", line 172, in configure_step self.log.error("Optional packages could not be found, this should not happen...") File "/home/users/fgeorgatos/.local/lib/python2.6/site-packages/easybuild_framework-1.3.0rc2-py2.6.egg/easybuild/tools/build_log.py", line 88, in error raise EasyBuildError(newMsg) EasyBuildError: 'EasyBuild crashed with an error (at easybuild/easyblocks/d/dolfin.py:172 in configure_step): Optional packages could not be found, this should not happen...'
