P.s. The module name used for the import is not “biopython”. It is “Bio”. But a module for Python 2.7.5 is not appearing in $EBINSTALLDIR/modules
I do see a $EBINSTALLDIR/software/Python/2.7.5-goalf-1.5.12-no-OFED/ Todd From: Todd Heywood <[email protected]<mailto:[email protected]>> Reply-To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> List-Post: [email protected] Date: Tuesday, January 28, 2014 at 1:49 PM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [easybuild] Python 2.7.5 with biopython I am using the easyconfig named Python-2.7.5-goalf-1.5.12-no-OFED.eb (after building the goalf toolchain). I added the following lines to the exts_list section of the .eb file in order to install BioPython: ('biopython', '1.63', { 'source_urls': ['http://biopython.org/DIST/'], }), It seems to build and package, but errors out on the sanity checking: ERROR: EasyBuild encountered an exception (at easybuild/software/EasyBuild/ 1.10.0/lib/python2.7/site-packages/easybuild_framework-1.10.0-py2.7.egg/ easybuild/main.py:809 in build_and_install_software): autoBuild Failed (last 300 chars): EasyBuild crashed with an error (at easybuild/software/EasyBuild/ 1.10.0/lib/python2.7/site-packages/easybuild_framework-1.10.0-py2.7.egg/ easybuild/framework/easyblock.py:1598 in sanity_check_step): Sanity check failed: sanity checks for ['biopython'] extensions failed! In the log, I see this: == 2014-01-28 13:33:42,311 main.EB_Python WARNING Extension: biopython failed to install, cmd 'python -c "import biopython"' (stdin: None) output: Traceback (most recent call last): File "<string>", line 1, in <module> ImportError: No module named biopython == 2014-01-28 13:33:42,312 main.EB_Python WARNING Sanity check for biopython failed: biopython failed to install, cmd 'python -c "import biopython"' (stdin: None) output: Traceback (most recent call last): File "<string>", line 1, in <module> ImportError: No module named biopython == 2014-01-28 13:33:42,313 main.EB_Python WARNING Sanity check: sanity checks for ['biopython'] extensions failed! I'm new to easybuild, and would appreciate any help. Thanks.
