On 10/04/14 16:25, Pablo Escobar Lopez wrote:
Hi Andreas,
As long as I am aware this is not possible in an easyconfig, you need
to go for easyblock, at least I have used an easyblock when I need
something like this
I also suggested to add this feature in this comment in github
https://github.com/hpcugent/easybuild-easyconfigs/pull/795#issuecomment-39011073
I think an easyconfig option like "postinstallcmds" can be quite
handy for some applications
In fact, there is a possibility when you're using the PackedBinary
easyblock, by defining the install_cmd in the easyconfig file.
By default, PackedBinary will use the install_step procedure from the
Binary easyblock, which will do the equivalent of "cp -a *
%(installdir)s", unless install_cmd is defined.
So, you can define install_cmd as follows:
install_cmd = "cp -a * %(installdir)s && chmod +x fastqc"
I didn't test this, but it should work.
I agree with Pablo that supporting something like "postinstallcmds"
would be better though, since that would work across all easyblocks.
Shouldn't be too hard to implement...
regards,
Kenneth
regards,
Pablo.
2014-04-10 15:58 GMT+02:00 Andreas Panteli <[email protected]
<mailto:[email protected]>>:
Dear all,
I am trying to import FastQC into Easybuild using the
easyblock PackedBinary.
The problem I am facing is that I have to chmod +x the executable
after the install step. Is there any trick for that or do I have
to implement an easyblock?
Best regards,
*Andreas Panteli*
HPC Systems Support
CaSToRC, The Cyprus Institute
*Tel:* +357 22208610 <tel:%2B357%2022208610>
*Email:* [email protected] <mailto:[email protected]>
--
Pablo Escobar López
HPC systems engineer
Biozentrum, University of Basel
Swiss Institute of Bioinformatics SIB
Email: [email protected] <mailto:[email protected]>
Phone: +41 61 267 15 82
http://www.biozentrum.unibas.ch
