Hi Arnau,
have you visited http://tophat.cbcb.umd.edu/downloads/ ? The site no
longer exists.
If you visit http://tophat.cbcb.umd.edu you will be redirected to
http://ccb.jhu.edu/software/tophat/index.shtml
I suppose the new source url should be
http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.12.tar.gz (or
http://ccb.jhu.edu/software/tophat/downloads/ )
Txema
El 22/07/14 15:08, Arnau Bria escribió:
Hello all,
I'd like to install tophat so I'm running a regular eb install like:
eb --configfiles=config
/nfs/software/as/el6.3/EasyBuild/easyconfig/website/easybuild-easyconfigs-1.13.0.0/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb
-r --try-toolchain=goolf,1.4.10-no-OFED
but it fails with the error:
FAILED: Installation ended unsuccessfully: build failed (first 300 chars):
EasyBuild crashed with an error (at easybuild/framework/easyblock.py:588 in
obtain_file): Couldn't find file tophat-2.0.8.tar.gz anywhere, and downloading
it didn't work either...
Paths attempted (in order): /tmp/easybuild-zV7wqw/t/TopHat/tophat-2.0.8.tar.gz,
/tmp/easybuild-zV7wqw/TopHat/tophat-2.0.
the eb file looks like:
name = 'TopHat'
version = '2.0.8'
biodeps = 'biodeps'
biodeps_ver = '1.6'
biodeps_versuff = '-extended'
versionsuffix = '-%s-%s%s' % (biodeps, biodeps_ver, biodeps_versuff)
homepage = 'http://tophat.cbcb.umd.edu/'
description = """TopHat is a fast splice junction mapper for RNA-Seq reads."""
toolchain = {'name': 'goolf', 'version': '1.4.10'}
toolchainopts = {'optarch': True, 'pic': True}
sources = [SOURCELOWER_TAR_GZ]
source_urls = ['http://tophat.cbcb.umd.edu/downloads/']
but this source_url does not exist
how may I report this error? here is enough? better report a bug?
Bests,
Arnau
