I verified it when I tried the workaround and it seems to work fine, at least in this case.
Here is my build log == 2014-10-27 10:36:55,249 main.run INFO cmd "unset CC && unset CXX && make -j 1 " exited with exitcode 0 and output: cat: src/version_git.h: No such file or directory wget -q http://hypervolu.me/freebayes/build/ & cd src && make make[1]: Entering directory `/tmp/easybuild/freebayes/0.9.18-1-g4233a23-dirty/goolf-1.4.10/freebayes/src' DETECTED_VERSION = v0.9.18-1-g4233a23-dirty CURRENT_VERSION = Updating version file. cd ../bamtools && mkdir -p build && cd build && cmake .. && make -- The C compiler identification is GNU 4.7.2 -- The CXX compiler identification is GNU 4.7.2 -- Check for working C compiler: /import/bc2/apps/GCC/4.7.2/bin/cc -- Check for working C compiler: /import/bc2/apps/GCC/4.7.2/bin/cc -- works By the way, I just sent a pull request for this easyconfig in case anyone want to look at it https://github.com/hpcugent/easybuild-easyconfigs/pull/1165 2014-10-28 11:54 GMT+01:00 Ward Poelmans <[email protected]>: > On Tue, Oct 28, 2014 at 11:10 AM, Pablo Escobar <[email protected]> > wrote: > > > recently I wrote a FreeBayes easyconfig and I had to add this to the > > easyconfig to avoid that error > > > > # workaround to avoid the error "The C compiler identification is > unknown" > > prebuildopts = "unset CC && unset CXX && " > > Don't you fall back to system gcc than? > > Ward > -- Pablo Escobar López HPC systems engineer Biozentrum, University of Basel Swiss Institute of Bioinformatics SIB Email: [email protected] Phone: +41 61 267 21 80 http://www.biozentrum.unibas.ch
