Bernd
Sent from Windows Mail
*From:* Kenneth Hoste <mailto:[email protected]>
*Sent:* Tuesday, 26 May, 2015 16:18
*To:* EasyBuild <mailto:[email protected]>
Hi Bernd,
On 26/05/15 12:29, Mohr, Bernd wrote:
Kenneth,
by accident, I found the cause for the failure
In my home directory I had created a symbolic link
easyblocks →
/opt/local/easybuild-2.1/software/Core/EasyBuild/2.1.0/lib/python2.7/site-packages/easybuild_easyblocks-2.1.0-py2.7.egg/easybuild/easyblocks/
to be able to quicker access the code. Of course, I was running
the bootstrap script
from my home directory 😉
All fine now.
As far as I can tell, having a symlink like that present shouldn't
impact the bootstrap procedure at all...
Is that the only thing you changed? And can you reproduce the problem
now if you put the symlink back in place (to the 2.1.0 directory)?
regards,
Kenneth
Thanks
Bernd
*From:* Kenneth Hoste <mailto:[email protected]>
*Sent:* Tuesday, 26 May, 2015 11:42
*To:* EasyBuild <mailto:[email protected]>
Hi Bernd,
On 26/05/15 11:32, Mohr, Bernd wrote:
Dear EasyBuild team,
I tried to bootstrap v.2.1.1 (method (i)), but get the
following error:
**********************************************************************************************************************
carbon-vm:~ [103] ./bootstrap_eb.py
--prefix=/opt/local/easybuild-2.1.1
Don't use --prefix here, just specify the install prefix to
bootstrap EasyBuild into directly:
$ ./bootstrap_eb.py /opt/local/easybuild-2.1.1
This is not the cause of the problem however, since this only
applies to stage 2 of the bootstrap...
[[INFO]] Found module command 'lmod' (Lmod), so using it.
[[INFO]]
+++ STAGE 0: installing distribute via included (patched)
distribute_setup.py...
Downloading
http://pypi.python.org/packages/source/d/distribute/distribute-0.6.34.tar.gz
Extracting in /tmp/tmp8TWdBC
Now working in /tmp/tmp8TWdBC/distribute-0.6.34
Installing Distribute
[[INFO]]
+++ STAGE 1: installing EasyBuild in temporary dir with
easy_install...
[[INFO]] installing EasyBuild with 'easy_install --quiet
--upgrade --prefix=/tmp/tmpvL8XTk/eb_stage1 easybuild'
Installing with setuptools.setup...
Installing version 2.1.1
warning: install_lib: 'build/lib' does not exist -- no Python
modules to install
zip_safe flag not set; analyzing archive contents...
Installing with setuptools.setup...
Installing version 2.1.1 (API version 2)
Installing with setuptools.setup...
Installing version 2.1.0 (required versions: API >= 2)
error: Could not find required distribution
easybuild-easyblocks==2.1.1
For some reason, easy_install is deciding to go with
easybuild-easyblocks v2.1.0, only to then complain that it can't
find v2.1.1 ...
I've just retried myself, I can't reproduce this problem;
bootstrap is working fine for me (just like it did when I tested
this after the release).
Can you provide debug output by defining
$EASYBUILD_BOOTSTRAP_DEBUG to something, e.g. "export
EASYBUILD_BOOTSTRAP_DEBUG=1" ?
Maybe also share what you have in
$HOME/.local/lib/python2.*/site-packages, if anything.
regards,
Kenneth
**********************************************************************************************************************
Any idea what is wrong?
Bernd
*From:* Kenneth Hoste <mailto:[email protected]>
*Sent:* Monday, 18 May, 2015 19:20
*To:* EasyBuild <mailto:[email protected]>
Hello EasyBuilders,
I'm happy to announce the release of EasyBuild v2.1.1, which
is the best
release so far, no doubt about it. (*)
This is a bugfix release, mainly motivated by some issues
with the
--module-only command line option that was introduced in
EasyBuild
v2.1.0: modules generated via --module-only in combination
with --force
were missing 'module load' statements for dependencies, and
several
easyblocks turned out to be incompatible with --module-only.
These problems have been resolved, and the unit tests were
enhanced to
try and make sure easyblocks remain compatible with
--module-only.
Other changes include support for supplying regular
expression patterns
to --search (and only considering the easyconfig filename,
rather than
the entire path, see [2]), support for builing and installing
GROMACS
v5.x, adding several new toolchain versions (ictce/7.3.5 and
Cray*), and
support for installing 3 new software packages.
A detailed overview of all changes is available in the
EasyBuild release
notes [3].
To upgrade to EasyBuild v2.1.1, there are several options:
(i) (re)bootstrap EasyBuild to obtain an EasyBuild/2.1.1
module to
load [4]
(ii) install EasyBuild v2.1.1 with a previous version of
EasyBuild,
using the easyconfig file available in [5]
note: make sure you're using https PyPI source URLs
in case
you're using an easyconfig file obtained via some other way,
cfr. [6]
(iii) install EasyBuild v2.1.1 from PyPI, using one of
the standard
Python installation tools (easy_install, pip, ...) [7]
(iv) updating your Git working copies of the different
EasyBuild
repositories
Enjoy!
regards,
Kenneth
EasyBuild release manager
[1] https://pypi.python.org/pypi/easybuild
[2]
https://easybuild.readthedocs.org/en/latest/Using_the_EasyBuild_command_line.html#searching-for-easyconfigs
[3]
https://easybuild.readthedocs.org/en/latest/Release_notes.html
[4]
https://easybuild.readthedocs.org/en/latest/Installation.html#bootstrapping-easybuild
[5] https://github.com/hpcugent/easybuild-easyconfigs/pull/1615
[6] https://github.com/hpcugent/easybuild-framework/pull/1286
[7]
https://easybuild.readthedocs.org/en/latest/Installation_Alternative.html#standard-installation-of-latest-release
(*): I'm aware I stated the same about EasyBuild v2.1.0, but
this was a
valid statement at the time.
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