On 03/06/15 11:46, Niek de Klein wrote:
Hi all,
I'm trying to write an .eb file for verifyBamID. The folder where the
executable verifyBamID is located in is also called verifyBamId.
So now when I use
executables = ['verifyBamID']
files_to_copy = [(executables, 'bin')]
The path to the executable is
$root/verifyBamID/1.1.2-goolf-1.7.20/bin/verifyBamID/bin/verifyBamID.
This should be $root/verifyBamID/1.1.2-goolf-1.7/20/bin/verifyBamID,
both for clarity and because $root/verifyBamID/1.1.2-goolf-1.7/20/bin/
is added to PATH.
I have the same problem for other software where the folder name is
the same as the executable. For software where the rest of the .eb
file is exactly the same but where the folder name and executable name
are different it works as expected.
How can I get folder structure to be set correctly when the folder and
software name are the same?
So, how about using:
executables = ['verifyBamID/bin/*']
files_to_copy = [(executables, 'bin')]
That should work...
regards,
Kenneth
PS: Please consider opening a pull request for ouyr easyconfigs, when
they work. See https://github.com/hpcugent/easybuild/wiki/Contributing-back.
