Hi Niek,
Using a non-empty mail subject is recommended. ;-)
On 11/09/15 12:26, Niek de Klein wrote:
Hi all,
I can't find an easyblock for this but maybe I have overlooked it so:
I'm trying to install HOMER, which is installed by putting
"configureHomer.pl" in the folder where you want to have HOMER
installed (so this should not go to /sourcres/h/Homer but to the
installation folder), and then have to run
perl configureHomer.pl
I haven't found an EasyBlock that uses perl to install programs
though, is one already available? Here is the EB I have so far:
easyblock = 'EB_HOMER' # tried to make my own easyblock that uses
perl but did not work
name = 'HOMER'
version = 'master'
homepage = 'http://homer.salk.edu/homer/'
description = """HOMER (Hypergeometric Optimization of Motif
EnRichment) is a suite of tools for Motif Discovery."""
toolchain = {'name': 'goolf', 'version': '1.7.20'}
source_urls = ['http://homer.salk.edu/homer/']
sources = ['configureHomer.pl']
No versioning? :(
executables =
['makeTagDirectory','findPeaks','mergePeaks','genomeOntology','getPeakTags','makeUCSCfile',
'getDifferentialPeaks', 'assignGenomeAnnotation',
'homerTools','homer','homer2','analyzeHiC',
'getGenomeTilingPeaks']
files_to_copy = [(executables,'bin')]
dependencies = [
('Ghostscript', '9.16'),
('Weblogo', '2.8.2', '', True),
('BLAT', '3.5'),
]
moduleclass = 'bio'
Maybe take a look at the CmpCp easyblock. It derives from MakeCp, and
provides support for something like this (untested):
cmds_map = [('configureHomer.pl', 'perl configureHomer.pl')]
If you want help with the EB_HOMER easyblock, let's see it. :-)
regards,
Kenneth
