Hi Martin,
Thanks for making the .eb file. However, I am getting the below error for the plugin patch, do you know how to fix this? Thanks, Niek == 2015-10-08 21:23:25,613 main ERROR cmd "patch -b -p1 -i /apps/sources/EasyBuild/custom/Bridger-r2014-12-01-fix-plugin-Makefiles.patch" exited with exitcode 1 and output: patching file plugins/fastool/Makefile Hunk #1 FAILED at 1. 1 out of 1 hunk FAILED -- saving rejects to file plugins/fastool/Makefile.rej patching file plugins/rsem/makefile Hunk #2 FAILED at 50. Hunk #3 FAILED at 83. Hunk #4 FAILED at 93. Hunk #5 FAILED at 127. 4 out of 5 hunks FAILED -- saving rejects to file plugins/rsem/makefile.rej patching file plugins/rsem/sam/Makefile Hunk #1 FAILED at 1. Hunk #2 FAILED at 25. Hunk #3 FAILED at 48. 3 out of 3 hunks FAILED -- saving rejects to file plugins/rsem/sam/Makefile.rej patching file plugins/rsem/sam/bcftools/Makefile Hunk #1 FAILED at 1. Hunk #2 FAILED at 11. Hunk #3 FAILED at 31. 3 out of 3 hunks FAILED -- saving rejects to file plugins/rsem/sam/bcftools/Makefile.rej patching file plugins/rsem/sam/misc/Makefile Hunk #1 FAILED at 1. Hunk #2 FAILED at 11. Hunk #3 FAILED at 20. Hunk #4 FAILED at 28. 4 out of 4 hunks FAILED -- saving rejects to file plugins/rsem/sam/misc/Makefile.rej (at easybuild/tools/run.py:359 in parse_cmd_output) == 2015-10-08 21:23:25,647 main.easyblock WARNING build failed (first 300 chars): cmd "patch -b -p1 -i /apps/sources/EasyBuild/custom/Bridger-r2014-12-01-fix-plugin-Makefiles.patch" exited with exitcode 1 and output: patching file plugins/fastool/Makefile Hunk #1 FAILED at 1. 1 out of 1 hunk FAILED -- saving rejects to file plugins/fastool/Makefile.rej patching file plugins/rsem/ == 2015-10-08 21:23:25,647 main.MakeCp INFO Closing log for application name Bridger version r2014-12-01 On Thu, Oct 8, 2015 at 5:49 PM, Martin <[email protected]> wrote: > The software derives stuff from BOOST_ROOT existing as an environment > variable > > Anyhow I put some work into it as we also needed Bridger, sorry for it not > being a pull request but maybe it is of some use to Niek de Klein. > > Mind you: Not my best piece of work, but it gets the job done. Also Kudos > to Arnau for beating me to it :) > > best, > Martin > > > Files are attached > On Wed, Oct 7, 2015 at 5:11 PM, Kenneth Hoste <[email protected]> > wrote: > >> Why the $BOOST_ROOT, and not just use >> --configopts="--with-boost=$EBROOTBOOST" ? >> > > > > > -- > http://www.xing.com/profile/Martin_Marcher > http://www.linkedin.com/in/martinmarcher > Mobil: +43 / 660 / 62 45 103 > UID: ATU68801424 >
