On 10/09/2015 05:28 PM, Kenneth Hoste wrote:
Hi John-Paul,
On 10/10/15 00:08, John-Paul Robinson wrote:
Good to know. I do plan on adding the updated Cufflinks. Currently
working through an error finding the bam library. Trying to
understand how the EBROOT<tag> env vars get set. Will post a separate
thread if I can't figure it out shortly.
The $EBROOT environment variables are defined by the modules generated
by EasyBuild (and also via some other ways, but likely not relevant
(yet) for you, cfr.
http://easybuild.readthedocs.org/en/latest/Using_external_modules.html).
$EBROOT* is wonderful. I encourage our folks that build by hand
to include it in the module. I pondered $TAMUROOT* for local builds
but that just causes confusion. It's so nice to tell our users
(university researchers with no clue of Linux/compiling, etc.) to just use
$EBROOTwhatver/lib
Note, I am an abuser of EasyBuild. I have twisted and distorted it
in ways the designers never intended (or if they did, perhaps didn't
expect). So what I offer may not reflect best practices.
jack
