Do you have your easyconfigs posted somewhere? What you did will work, but you probably want to manage it on a per extension basis
On Wed, Nov 18, 2015, 9:47 AM Stolpe, Oliver <[email protected]> wrote: > Hello list, > > I have some homegrown recipes that are installing python modules. They > used to work with EasyBuild v2.1.0, but since the new releases of EasyBuild > they can't pass the sanity check. They search for a bin directory, but some > python libs simply don't have any. Right now, I am overriding it by setting > > sanity_check_paths = { > 'files': [], > 'dirs': [('lib', 'lib64')] > } > > Is there a more elegant way to do this? > > Thanks, > Oliver > > == 2015-11-18 13:09:33,267 runpy.PythonPackage INFO Using default sanity > check paths: {'files': [], 'dirs': ['bin', ('lib', 'lib64')]} > == 2015-11-18 13:09:33,267 runpy.PythonPackage INFO Using specified sanity > check commands: [] > == 2015-11-18 13:09:33,267 runpy.PythonPackage WARNING Sanity check: no > (non-empty) directory of ('bin',) in > /tools/easybuild/software/pysam/0.8.3-foss-2015a-Python-2.7.9 > == 2015-11-18 13:09:33,268 runpy.filetools INFO Creating directory > /tmp/eb-3586qK/tmpkQnTbE/all/pysam (parents: True, set_gid: False, sticky: > False) > == 2015-11-18 13:09:33,269 runpy.PythonPackage INFO Module file > /tmp/eb-3586qK/tmpkQnTbE/all/pysam/0.8.3-foss-2015a-Python-2.7.9 written: > #%Module > > [......] > > == sanity checking... > == FAILED: Installation ended unsuccessfully (build directory: > /tools/easybuild/build/pysam/0.8.3/foss-2015a-Python-2.7.9): build failed > (first 300 chars): Sanity check failed: no (non-empty) directory of > ('bin',) in /tools/easybuild/software/pysam/0.8.3-foss-2015a-Python-2.7.9 > == Results of the build can be found in the log file > /tmp/eb-3586qK/easybuild-pysam-0.8.3-20151118.130659.LjfHr.log > ERROR: Build of > /tools/easybuild.local/easyconfigs/p/pysam/pysam-0.8.3-foss-2015a-Python-2.7.9.eb > failed (err: "build failed (first 300 chars): Sanity check failed: no > (non-empty) directory of ('bin',) in > /tools/easybuild/software/pysam/0.8.3-foss-2015a-Python-2.7.9") > > > -- > > Oliver Stolpe > Bioinformatics Core Unit > Berlin Institute of Health > Phone: +49 30 450 543605 > > Luisenstr. 56, 10117 Berlin, Germany >
