I am trying to install easybuild using a non system default version of python.
I call the bootstrap script directly from the version i would like to use, but
it gives some errors during the sanity check. What is the proper way to install
it using a different python install. I have a few different python
installations on the system and had the same issue with each.
[naveed@compute-1-1 ~]$ type module
module is a function
module ()
{
eval `/usr/bin/modulecmd bash $*`
}
[naveed@compute-1-1 ~]$ type -f module
-bash: type: module: not found
[naveed@compute-1-1 ~]$ module --version
VERSION=3.2.10
DATE=2012-12-21
AUTOLOADPATH=undef
BASEPREFIX="/usr/share"
BEGINENV=99
CACHE_AVAIL=undef
DEF_COLLATE_BY_NUMBER=undef
DOT_EXT=""
EVAL_ALIAS=1
HAS_BOURNE_FUNCS=1
HAS_BOURNE_ALIAS=1
HAS_TCLXLIBS=undef
HAS_X11LIBS=1
LMSPLIT_SIZE=undef
MODULEPATH="/share/apps/modules/modulefiles"
MODULES_INIT_DIR="/usr/share/Modules/init"
PREFIX="/usr/share/Modules"
TCL_VERSION="8.4"
TCL_PATCH_LEVEL="8.4.13"
TMP_DIR="/tmp"
USE_FREE=undef
VERSION_MAGIC=1
VERSIONPATH=undef
WANTS_VERSIONING=0
WITH_DEBUG_INFO=undef
[naveed@compute-1-1 ~]$ python26 bootstrap_eb.py $PREFIX
[[INFO]] Installation prefix /share/apps/software/easybuild
[[INFO]] Found module command 'modulecmd' (EnvironmentModulesC), so using it.
[[INFO]]
+++ STAGE 0: installing distribute via included (patched) distribute_setup.py...
Downloading
http://hpcugent.github.io/easybuild/files/distribute-0.6.49-patched1.tar.gz
Extracting in /tmp/tmpZ9PU4A
Now working in /tmp/tmpZ9PU4A/distribute-0.6.49
Installing Distribute
[[INFO]]
+++ STAGE 1: installing EasyBuild in temporary dir with easy_install...
[[INFO]] installing EasyBuild with 'easy_install --quiet --upgrade
--prefix=/tmp/tmps8T4M7/eb_stage1 easybuild'
Installing with setuptools.setup...
Installing version 2.6.0
warning: install_lib: 'build/lib' does not exist -- no Python modules to install
zip_safe flag not set; analyzing archive contents...
Installing with setuptools.setup...
Installing version 2.6.0 (API version 2)
Installing with setuptools.setup...
Installing version 2.6.0 (required versions: API >= 2)
Installing with setuptools.setup...
Installing version 2.6.0 (required versions: API >= 2, easyblocks >= 2.6)
warning: install_lib: 'build/lib' does not exist -- no Python modules to install
INFO: This is (based on) vsc.install.shared_setup 0.9.13
INFO: run_tests from base dir /tmp/easy_install-J59IOq/vsc-base-2.4.16 (using
executable /tmp/easy_install-J59IOq/vsc-base-2.4.16/setup.py)
WARN: cleanup lib/vsc_base.egg-info
INFO: removing 'lib/vsc_base.egg-info' (and everything under it)
INFO: generated list: ['vsc', 'vsc.utils']
INFO: generated packages list: ['vsc', 'vsc.utils']
INFO: makesetupcfg set to True, (re)creating setup.cfg
INFO: found license /tmp/easy_install-J59IOq/vsc-base-2.4.16/LICENSE with
md5sum 5f30f0716dfdd0d91eb439ebec522ec2
INFO: Found license name LGPLv2+ and classifier License :: OSI Approved :: GNU
Lesser General Public License v2 or later (LGPLv2+)
INFO: setting license LGPLv2+
INFO: No name defined, trying to determine it
INFO: found match url https://github.com/hpcugent/vsc-base in
/tmp/easy_install-J59IOq/vsc-base-2.4.16/PKG-INFO
INFO: found match name vsc-base in
/tmp/easy_install-J59IOq/vsc-base-2.4.16/PKG-INFO
INFO: Removing None download_url
INFO: get_name_url returns {'url': 'https://github.com/hpcugent/vsc-base',
'name': 'vsc-base'}
INFO: using long_description Common tools used within our organization.
Originally created by the HPC team of Ghent University (http://ugent.be/hpc).
INFO: generated list: ['bin/optcomplete.bash', 'bin/logdaemon.py',
'bin/startlogdaemon.sh', 'bin/bdist_rpm.sh']
INFO: generated scripts list: ['bin/optcomplete.bash', 'bin/logdaemon.py',
'bin/startlogdaemon.sh', 'bin/bdist_rpm.sh']
INFO: Checking .pth file support in .
INFO: /usr/bin/python26 -E -c pass
INFO: Searching for vsc-install>=0.9.8
INFO: Reading http://pypi.python.org/simple/vsc-install/
INFO: Best match: vsc-install 0.9.12
INFO: Downloading
https://pypi.python.org/packages/source/v/vsc-install/vsc-install-0.9.12.tar.gz#md5=ff9e84e6f9c766f2d6f6e2307f80c5c6
INFO: Processing vsc-install-0.9.12.tar.gz
INFO: Writing
/tmp/easy_install-J59IOq/vsc-base-2.4.16/temp/easy_install-oGNbJT/vsc-install-0.9.12/setup.cfg
INFO: Running vsc-install-0.9.12/setup.py -q bdist_egg --dist-dir
/tmp/easy_install-J59IOq/vsc-base-2.4.16/temp/easy_install-oGNbJT/vsc-install-0.9.12/egg-dist-tmp-9q7F0A
INFO: This is (based on) vsc.install.shared_setup 0.9.12
INFO: run_tests from base dir
/tmp/easy_install-J59IOq/vsc-base-2.4.16/temp/easy_install-oGNbJT/vsc-install-0.9.12
(using executable
/tmp/easy_install-J59IOq/vsc-base-2.4.16/temp/easy_install-oGNbJT/vsc-install-0.9.12/setup.py)
WARN: cleanup lib/vsc_install.egg-info
INFO: removing 'lib/vsc_install.egg-info' (and everything under it)
INFO: generated list: ['vsc.install', 'vsc']
INFO: generated packages list: ['vsc.install', 'vsc']
INFO: makesetupcfg set to True, (re)creating setup.cfg
INFO: found license
/tmp/easy_install-J59IOq/vsc-base-2.4.16/temp/easy_install-oGNbJT/vsc-install-0.9.12/LICENSE
with md5sum 5f30f0716dfdd0d91eb439ebec522ec2
INFO: Found license name LGPLv2+ and classifier License :: OSI Approved :: GNU
Lesser General Public License v2 or later (LGPLv2+)
INFO: setting license LGPLv2+
INFO: No name defined, trying to determine it
INFO: found match url https://github.com/hpcugent/vsc-install in
/tmp/easy_install-J59IOq/vsc-base-2.4.16/temp/easy_install-oGNbJT/vsc-install-0.9.12/PKG-INFO
INFO: found match name vsc-install in
/tmp/easy_install-J59IOq/vsc-base-2.4.16/temp/easy_install-oGNbJT/vsc-install-0.9.12/PKG-INFO
INFO: Removing None download_url
INFO: get_name_url returns {'url': 'https://github.com/hpcugent/vsc-install',
'name': 'vsc-install'}
INFO: using long_description vsc-install provides shared setuptools functions
and classes for python libraries developed by UGent's HPC group
INFO: generated list: []
INFO: generated scripts list: []
WARN: zip_safe flag not set; analyzing archive contents...
WARN: vsc.fancylogger: module references file
WARN: vsc.install.shared_setup: module references file
WARN: vsc.install.shared_setup: module references path
WARN: vsc.install.shared_setup: module MAY be using inspect.getsource
INFO:
Installed /tmp/easy_install-J59IOq/vsc-base-2.4.16/vsc_install-0.9.12-py2.6.egg
WARN: zip_safe flag not set; analyzing archive contents...
WARN: vsc.utils.exceptions: module MAY be using inspect.getouterframes
WARN: vsc.utils.generaloption: module MAY be using inspect.stack
WARN: vsc.utils.fancylogger: module MAY be using inspect.stack
WARN: cleanup lib/vsc_install.egg-info
WARN: zip_safe flag not set; analyzing archive contents...
WARN: vsc.fancylogger: module references file
WARN: vsc.install.shared_setup: module references file
WARN: vsc.install.shared_setup: module references path
WARN: vsc.install.shared_setup: module MAY be using inspect.getsource
[[INFO]]
+++ STAGE 2: installing EasyBuild in /share/apps/software/easybuild with
EasyBuild from stage 1...
== temporary log file in case of crash /tmp/eb-4UnEdo/easybuild-IqOSBj.log
== processing EasyBuild easyconfig /tmp/tmps8T4M7/EasyBuild-2.6.0.eb
== building and installing EasyBuild/2.6.0...
== fetching files...
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== building...
== testing...
== installing...
== taking care of extensions...
== postprocessing...
== sanity checking...
== FAILED: Installation ended unsuccessfully (build directory:
/tmp/tmps8T4M7/EasyBuild/2.6.0/dummy-dummy): build failed (first 300 chars):
Sanity check failed: no (non-empty) directory of
('lib/python2.6/site-packages', 'lib64/python2.6/site-packages') in
/share/apps/software/easybuild/software/EasyBuild/2.6.0, sanity check command
eb --version exited with code 3 (output: ERROR: EasyBuild requires Python v2.6
or a more recent v2.x, fou
== Results of the build can be found in the log file
/tmp/eb-4UnEdo/easybuild-EasyBuild-2.6.0-20160204.083827.xiZLc.log
Traceback (most recent call last):
File "bootstrap_eb.py", line 727, in
main()
File "bootstrap_eb.py", line 537, in main
stage2(tmpdir, templates, install_path, distribute_egg_dir, sourcepath)
File "bootstrap_eb.py", line 455, in stage2
easybuild_main()
File
"/tmp/tmps8T4M7/eb_stage1/lib/python2.6/site-packages/easybuild_framework-2.6.0-py2.6.egg/easybuild/main.py",
line 350, in main
ecs_with_res = build_and_install_software(ordered_ecs, init_session_state,
exit_on_failure=exit_on_failure)
File
"/tmp/tmps8T4M7/eb_stage1/lib/python2.6/site-packages/easybuild_framework-2.6.0-py2.6.egg/easybuild/main.py",
line 148, in build_and_install_software
raise EasyBuildError(test_msg)
easybuild.tools.build_log.EasyBuildError: 'Build of
/tmp/tmps8T4M7/EasyBuild-2.6.0.eb failed (err: "build failed (first 300 chars):
Sanity check failed: no (non-empty) directory of
(\'lib/python2.6/site-packages\', \'lib64/python2.6/site-packages\') in
/share/apps/software/easybuild/software/EasyBuild/2.6.0, sanity check command
eb --version exited with code 3 (output: ERROR: EasyBuild requires Python v2.6
or a more recent v2.x, fou")'
