Kenneth, I hate to ask stupid questions, but sometimes it can't be helped. How can I test the PRs?
Judy From: [email protected] [mailto:[email protected]] On Behalf Of Kenneth Hoste Sent: Tuesday, February 09, 2016 5:18 AM To: [email protected] Subject: Re: [easybuild] Warning from EasyBuild 2.6.0 Hi Judith, Thank you, that's helpful. The warnings should be solved by the changes being made in https://github.com/hpcugent/easybuild-framework/pull/1593 and https://github.com/hpcugent/vsc-install/pull/22 . regards, Kenneth On 05/02/16 16:33, Gardiner, Judith wrote: Here it is. [oakley02]$ python -c 'import sys;print sys.version;import vsc;print vsc.__path__;import easybuild;print easybuild.__path__' 2.6.6 (r266:84292, May 22 2015, 08:34:51) [GCC 4.4.7 20120313 (Red Hat 4.4.7-15)] /usr/local/easybuild/2.6.0/software/EasyBuild/2.6.0/lib/python2.6/site-packages/vsc_base-2.4.16-py2.6.egg/vsc/__init__.py:29: UserWarning: Module vsc was already imported from /usr/local/easybuild/2.6.0/software/EasyBuild/2.6.0/lib/python2.6/site-packages/vsc_base-2.4.16-py2.6.egg/vsc/__init__.pyc, but /usr/local/easybuild/2.6.0/software/EasyBuild/2.6.0/lib/python2.6/site-packages/vsc_install-0.9.12-py2.6.egg is being added to sys.path import pkg_resources ['/usr/local/easybuild/2.6.0/software/EasyBuild/2.6.0/lib/python2.6/site-packages/vsc_base-2.4.16-py2.6.egg/vsc', '/usr/local/easybuild/2.6.0/software/EasyBuild/2.6.0/lib/python2.6/site-packages/vsc_install-0.9.12-py2.6.egg/vsc'] ['/usr/local/easybuild/2.6.0/software/EasyBuild/2.6.0/lib/python2.6/site-packages/easybuild_framework-2.6.0-py2.6.egg/easybuild', '/usr/local/easybuild/2.6.0/software/EasyBuild/2.6.0/lib/python2.6/site-packages/easybuild_easyblocks-2.6.0-py2.6.egg/easybuild'] Judy From: [email protected]<mailto:[email protected]> [mailto:[email protected]] On Behalf Of Kenneth Hoste Sent: Friday, February 05, 2016 4:07 AM To: [email protected]<mailto:[email protected]> Cc: Stijn De Weirdt Subject: Re: [easybuild] Warning from EasyBuild 2.6.0 Hi Judith, We're looking into a solution for these warnings, both in vsc-base and EasyBuild, see also https://github.com/hpcugent/easybuild-framework/issues/1588 Can you provide us the output of the following command? python -c 'import sys;print sys.version;import vsc;print vsc.__path__;import easybuild;print easybuild.__path__' regards, Kenneth On 03/02/16 19:13, Kenneth Hoste wrote: Hi Judith, On 28/01/16 22:37, Gardiner, Judith wrote: [ruby01]$ eb --version /usr/local/easybuild/2.6.0/software/EasyBuild/2.6.0/lib/python2.6/site-packages/vsc_base-2.4.16-py2.6.egg/vsc/__init__.py:29: UserWarning: Module vsc was already imported from /usr/local/easybuild/2.6.0/software/EasyBuild/2.6.0/lib/python2.6/site-packages/vsc_base-2.4.16-py2.6.egg/vsc/__init__.pyc, but /usr/local/easybuild/2.6.0/software/EasyBuild/2.6.0/lib/python2.6/site-packages/vsc_install-0.9.12-py2.6.egg is being added to sys.path import pkg_resources /usr/local/easybuild/2.6.0/software/EasyBuild/2.6.0/lib/python2.6/site-packages/vsc_base-2.4.16-py2.6.egg/vsc/__init__.py:29: UserWarning: Module easybuild was already imported from /usr/local/easybuild/2.6.0/software/EasyBuild/2.6.0/lib/python2.6/site-packages/easybuild_framework-2.6.0-py2.6.egg/easybuild/__init__.pyc, but /usr/local/easybuild/2.6.0/software/EasyBuild/2.6.0/lib/python2.6/site-packages/easybuild_easyblocks-2.6.0-py2.6.egg is being added to sys.path import pkg_resources This is EasyBuild 2.6.0 (framework: 2.6.0, easyblocks: 2.6.0) on host ruby01.osc.edu. First of all, these warnings are harmless in the sense that everything will work even though they are being spit out. I agree they are ugly though, and we should try and get rid of them. The problem is that vsc-base was split up recently, into what vsc-base is now and vsc-install, which provides support for installing/testing vsc-* packages. This implies that the 'vsc' namespace is spread across two different directories now, and that "import vsc" in Python will result in reading vsc/__init__.py from two different places. Python (or setuptools?) thinks this is weird, and throws the warnings. Same applies to the 'easybuild' namespace, which is imported from two locations (framework & easyblocks). This is a well known issue, and there are workaround to just silence the warning [1,2], but that's probably not the best way to 'fix' this issue. We're actually getting it too on our systems, but not consistently, it depends on how you install EasyBuild (an I *think* also on the version of setuptools, but I'm not sure about that). I've opened an issue on this in the EasyBuild framework repository on GitHub [3], and tagged it to try and fix this by the next EasyBuild release. regards, Kenneth [1] http://stackoverflow.com/questions/7239518/module-pytz-was-already-imported [2] http://stackoverflow.com/questions/3861336/how-do-you-correct-module-already-loaded-userwarnings-in-python [3] https://github.com/hpcugent/easybuild-framework/issues/1588
