Kenneth, I had a symlink /opt/local/bin/lmod --> /opt/local/lmod/lmod/libexec/lmod (in the same way as for lua).
After removing the symlink, the installation works now. What is weird, is that this worked before: I just checked my other SuSE installation with EB 2.0, 2.1 and 2.2 and there it was no problem. I only had to make sure that /opt/local/lmod/lmod/libexec was in $PATH before /opt/local/bin Anyhow Thanks! Bernd On Fri, Jun 03, 2016 at 06:21:06PM +0200, Kenneth Hoste wrote: > Hi Bernd, > > Seems like there's a problem with your Lmod setup/installation: > > == 2016-06-03 17:55:47,165 modules.py:613 DEBUG Output of module > command '/opt/local/bin/lmod python load EasyBuild/2.8.1': stdout: ; > stderr: /opt/local/lua/lua/bin/lua: /opt/local/bin/lmod:84: module > 'myGlobals' not found: > no field package.preload['myGlobals'] > no file '/opt/local/bin/myGlobals.lua' > no file '/opt/local/bin/../tools/myGlobals.lua' > no file '/opt/local/bin/../shells/myGlobals.lua' > no file '/opt/local/bin/myGlobals/init.lua' > no file './myGlobals.lua' > no file '/opt/local/lua/5.1.4.8/share/lua/5.1/myGlobals.lua' > no file '/opt/local/lua/5.1.4.8/share/lua/5.1/myGlobals/init.lua' > no file '/opt/local/lua/5.1.4.8/lib/lua/5.1/myGlobals.lua' > no file '/opt/local/lua/5.1.4.8/lib/lua/5.1/myGlobals/init.lua' > no file '/opt/local/bin/../lib/myGlobals.so' > no file './myGlobals.so' > no file '/opt/local/lua/5.1.4.8/lib/lua/5.1/myGlobals.so' > no file '/opt/local/lua/5.1.4.8/lib/lua/5.1/loadall.so' > stack traceback: > [C]: in function 'require' > /opt/local/bin/lmod:84: in main chunk > [C]: ? > > > The $PYTHONPATH setting I was grabbing from the log earlier isn't > the value that is active when the 'import easybuild' is being run. > > The problem with the load is not detected by EasyBuild because Lmod > is exiting normally; usually it includes a 'false' in the stdout to > make the evaluation of the environment changes it spits out fail. > > Some commands are running fine: > > "/opt/local/lmod/lmod/libexec/lmod python --version" spits out > "Modules based on Lua: Version 6.4 2016-06-01 17:42" > > "/opt/local/lmod/lmod/libexec/lmod python --terse list" > "/opt/local/lmod/lmod/libexec/lmod python --ters avail" > "/opt/local/lmod/lmod/libexec/lmod python show Core/EasyBuild/2.8.1" > => all work fine (i.e. they don't crash) > > But then suddenly "/opt/local/bin/lmod python --terse list" goes > down hard like above. > > Note the change in location for 'lmod' itself... > > Shortly before, the log is showing this: > > == 2016-06-03 17:55:15,958 filetools.py:217 INFO Command lmod found > at /opt/local/bin/lmod > == 2016-06-03 17:55:15,958 filetools.py:217 INFO Command lmod found > at /opt/local/bin/lmod > == 2016-06-03 17:55:15,958 modules.py:179 DEBUG Different paths > found for module command 'lmod' via which/$PATH and $LMOD_CMD: lmod > vs /opt/local/lmod/lmod/libexec/lmod > == 2016-06-03 17:55:15,959 modules.py:185 DEBUG Using command lmod > == 2016-06-03 17:55:15,959 filetools.py:217 INFO Command lmod found > at /opt/local/bin/lmod > == 2016-06-03 17:55:15,959 modules.py:253 INFO Full path for module > command is /opt/local/bin/lmod, so using it > > > At some point EasyBuild switches from > /opt/local/lmod/lmod/libexec/lmod ($LMOD_CMD) to opt/local/bin/lmod > (via $PATH). > > That's very stupid/wrong, I'll check on that, but it seems to > explain what's going on... > > > > regards, > > Kenneth > > On 03/06/16 18:00, Bernd Mohr wrote: > >debug log attached. > > > >Executing after the failed installation: > > > >% setenv PYTHONPATH > >/opt/local/easybuild-2.8.1/software/Core/EasyBuild/2.8.1/lib/python2.7/site-packages > >% python -c "import easybuild" > > > >Also > > > >% setenv PYTHONPATH > >/opt/local/easybuild-2.8.1/software/Core/EasyBuild/2.8.1/lib/python2.7/site-packages:/opt/local/easybuild-2.8.1/software/Core/EasyBuild/2.8.1/lib64/python2.7/site-packages > >% python -c "import easybuild" > > > >no error / output > > > >Bernd > > > > > >On Fri, Jun 03, 2016 at 05:47:57PM +0200, Kenneth Hoste wrote: > >> > >>On 03/06/16 17:41, Bernd Mohr wrote: > >>>>OK, so everything *is* there, but for some reason Python isn't > >>>>picking up on it. Strange... > >>>> > >>>>You do have this, right? > >>>>ls -l > >>>>/opt/local/easybuild-2.8.1/software/Core/EasyBuild/2.8.1/lib/python2.7/site-packages/easybuild_framework-2.8.1-py2.7.egg/easybuild/__init__.py > >>>Yes > >>> > >>>>Sorry, I meant: > >>>> > >>>> cat > >>>> /opt/local/easybuild-2.8.1/software/Core/EasyBuild/2.8.1/lib/python2.7/site-packages/easy-install.pth > >>>import sys; sys.__plen = len(sys.path) > >>>./distribute-0.7.3-py2.7.egg > >>>./setuptools-22.0.2-py2.7.egg > >>>./vsc_install-0.10.6-py2.7.egg > >>>./vsc_base-2.5.1-py2.7.egg > >>>./easybuild_framework-2.8.1-py2.7.egg > >>>./easybuild_easyblocks-2.8.1-py2.7.egg > >>>./easybuild_easyconfigs-2.8.1-py2.7.egg > >>>import sys; new = sys.path[sys.__plen:]; del sys.path[sys.__plen:]; p = > >>>getattr(sys, '__egginsert', 0); sys.path[p:p] = new; sys.__egginsert = p + > >>>len(new) > >>Looks fine... > >>>>and let's throw in this too: > >>>> > >>>> cat > >>>> /opt/local/easybuild-2.8.1/software/Core/EasyBuild/2.8.1/lib/python2.7/site-packages/setuptools.pth > >>>./setuptools-22.0.2-py2.7.egg > >>This is fine too. > >>>Any PYTHONPATH issue? > >>>I tried unsetenv PYTHONPATH but doid not change anything > >> From the log you provided, right before the "/usr/bin/python -c > >>'import easybuid' " that fails. > >> > >>== 2016-06-03 16:53:19,262 environment.py:97 INFO Environment > >>variable PYTHONPATH set to > >>/opt/local/easybuild-2.8.1/software/Core/EasyBuild/2.8.1/lib/python2.7/site-packages:/opt/local/easybuild-2.8.1/software/Core/EasyBuild/2.8.1/lib64/python2.7/site-packages > >>(previous value: ...) > >> > >>So, looks fine. I have no idea why the import fails... > >> > >>OK, let's dig a little deeper. > >> > >>Can you rebootstrap with debugging enabled, and send back the full log? > >> > >> export EASYBUILD_BOOTSTRAP_DEBUG=1 > >> python bootstrap_eb.py /opt/local/easybuild-2.8.1 2>&1 | tee > >>eb-debug.log > >> > >>Also, let's try this (after the failing bootstrap): > >> > >>PYTHONPATH=/opt/local/easybuild-2.8.1/software/Core/EasyBuild/2.8.1/lib/python2.7/site-packages > >>python -c "import easybuild" > >> > >> > >>regards, > >> > >>Kenneth > >> > >> > >>>Bernd > >>> > >>>>regards, > >>>> > >>>>Kenneth > >>>>>;-) > >>>>> > >>>>>Bernd > >>>>> > >>>>>>regards, > >>>>>> > >>>>>>Kenneth > >>>>>> > >>>>>>On 03/06/16 17:00, Bernd Mohr wrote: > >>>>>>>Fresh install with > >>>>>>> > >>>>>>>% ./bootstrap_eb.py /opt/local/easybuild-2.8.1 > >>>>>>> > >>>>>>>on a fresh (empty) SuSE LEAP 42.1 system. > >>>>>>> > >>>>>>>% /usr/bin/python --version > >>>>>>>Python 2.7.9 > >>>>>>> > >>>>>>>Failure in Stage2: > >>>>>>> > >>>>>>> > >>>>>>>+++ STAGE 2: installing EasyBuild in /opt/local/easybuild-2.8.1 with > >>>>>>>EasyBuild from stage 1... > >>>>>>> > >>>>>>> > >>>>>>>== temporary log file in case of crash > >>>>>>>/tmp/eb-ZufCws/easybuild-bC72PS.log > >>>>>>>== processing EasyBuild easyconfig /tmp/tmpnlyQGk/EasyBuild-2.8.1.eb > >>>>>>>== building and installing Core/EasyBuild/2.8.1... > >>>>>>>== fetching files... > >>>>>>>== creating build dir, resetting environment... > >>>>>>>== unpacking... > >>>>>>>== patching... > >>>>>>>== preparing... > >>>>>>>== configuring... > >>>>>>>== building... > >>>>>>>== testing... > >>>>>>>== installing... > >>>>>>>== taking care of extensions... > >>>>>>>== postprocessing... > >>>>>>>== sanity checking... > >>>>>>>== FAILED: Installation ended unsuccessfully (build directory: > >>>>>>>/tmp/tmpnlyQGk/EasyBuild/2.8.1/dummy-dummy): build failed (first 300 > >>>>>>>chars): Sanity check failed: EasyBuild failed to install, cmd > >>>>>>>'/usr/bin/python -c "import easybuild"' (stdin: None) output: > >>>>>>>Traceback (most recent call last): > >>>>>>> File "<string>", line 1, in <module> > >>>>>>>ImportError: No module named easybuild > >>>>>>>, sanity check command eb --version exited with code 1 (output: /usr/bi > >>>>>>> > >>>>>>>Any ideas? > >>>>>>> > >>>>>>>Full installation log attached. > >>>>>>> > >>>>>>>Bernd > >>>>>>> > >>>>>>>-- > >>>>>>>Dr.-Ing. Bernd Mohr > >>>>>>>Juelich Supercomputing Centre > >>>>>>>Institute for Advanced Simulation > >>>>>>> > >>>>>>>E-Mail: [email protected] > >>>>>>>WWW: > >>>>>>>http://www.fz-juelich.de/SharedDocs/Personen/IAS/JSC/EN/staff/mohr_b.html > >>>>>>> > >>>>>>> > >>>>>>>------------------------------------------------------------------------------------------------ > >>>>>>>------------------------------------------------------------------------------------------------ > >>>>>>>Forschungszentrum Juelich GmbH > >>>>>>>52425 Juelich > >>>>>>>Sitz der Gesellschaft: Juelich > >>>>>>>Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 > >>>>>>>Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher > >>>>>>>Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), > >>>>>>>Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, > >>>>>>>Prof. Dr. Sebastian M. Schmidt > >>>>>>>------------------------------------------------------------------------------------------------ > >>>>>>>------------------------------------------------------------------------------------------------ > >>>>>>> -- Dr.-Ing. Bernd Mohr Juelich Supercomputing Centre Institute for Advanced Simulation E-Mail: [email protected] WWW: http://www.fz-juelich.de/SharedDocs/Personen/IAS/JSC/EN/staff/mohr_b.html
