Hello,
I am moving this discussion over here since it is hard to follow up on the IRC
channel (I don't have a computer online 24/7 to set up a bouncer and the time
zone differential from Europe does not help either).
I am trying to build ScientificPython and it fails with the following error:
Include/Scientific/arrayobject.h:2:30: fatal error:
numpy/oldnumeric.h: No such file or directory
The reason can be found in the fact that in toolchain.py it looks for
<base_dir>/include, <base_dir>/lib and <base_dir>/lib64 to obtain the paths
that need to be passed to the compiler. Although those are the default paths
for the majority of programs, python modules have a different path hierarchy
and it fails because for numpy the headers are in
<base_dir>/lib/python2.7/site-packages/numpy/core/include. See the following
debug log extract for evidence.
So, how would you suggest to proceed? One way would be to have a recursive
search starting from <base_dir> coupled with a more tight check on the
lib/include paths based not only on the directory name but also on its content
(are there .a, .o or .h files?). That would also solve the problem of false
positive entries like <numpy_base>/lib that does not contain library files at
all.
Davide
== 2016-11-01 12:05:51,970 toolchain.py:218 DEBUG set_variables: toolchain
variables. Do nothing.
== 2016-11-01 12:05:51,970 toolchain.py:647 DEBUG prepare: set additional
variables onlymod=False
== 2016-11-01 12:05:51,970 toolchain.py:270 DEBUG get_software_root software
root /opt/easybuild/software/Compiler/GCC/5.4.0-2.26/Python/2.7.12 for Python
was found in environment
== 2016-11-01 12:05:51,971 toolchain.py:270 DEBUG get_software_root software
root
/opt/easybuild/software/MPI/GCC/5.4.0-2.26/OpenMPI/1.10.4/numpy/1.8.2-Python-2.7.12
for numpy was found in environment
== 2016-11-01 12:05:51,971 variables.py:542 DEBUG Passthrough to LISTCLASS
element function append_subdirs
== 2016-11-01 12:05:51,971 variables.py:267 DEBUG _is_protected: False value
None (None)
== 2016-11-01 12:05:51,971 variables.py:297 DEBUG nappend: value None newvalue
[] position None
== 2016-11-01 12:05:51,971 variables.py:186 DEBUG append_subdirs: base
/opt/easybuild/software/Compiler/GCC/5.4.0-2.26/Python/2.7.12 subdirs
['include']
== 2016-11-01 12:05:51,972 variables.py:198 DEBUG append_subdirs: added
directory /opt/easybuild/software/Compiler/GCC/5.4.0-2.26/Python/2.7.12/include
== 2016-11-01 12:05:51,972 variables.py:542 DEBUG Passthrough to LISTCLASS
element function append_subdirs
== 2016-11-01 12:05:51,972 variables.py:267 DEBUG _is_protected: False value
None (None)
== 2016-11-01 12:05:51,972 variables.py:297 DEBUG nappend: value None newvalue
[] position None
== 2016-11-01 12:05:51,972 variables.py:186 DEBUG append_subdirs: base
/opt/easybuild/software/Compiler/GCC/5.4.0-2.26/Python/2.7.12 subdirs ['lib64',
'lib']
== 2016-11-01 12:05:51,973 variables.py:200 WARNING flags_for_subdirs:
directory /opt/easybuild/software/Compiler/GCC/5.4.0-2.26/Python/2.7.12/lib64
was not found
== 2016-11-01 12:05:51,973 variables.py:198 DEBUG append_subdirs: added
directory /opt/easybuild/software/Compiler/GCC/5.4.0-2.26/Python/2.7.12/lib
== 2016-11-01 12:05:51,973 variables.py:542 DEBUG Passthrough to LISTCLASS
element function append_subdirs
== 2016-11-01 12:05:51,973 variables.py:267 DEBUG _is_protected: False value
None (None)
== 2016-11-01 12:05:51,973 variables.py:297 DEBUG nappend: value None newvalue
[] position None
== 2016-11-01 12:05:51,974 variables.py:186 DEBUG append_subdirs: base
/opt/easybuild/software/MPI/GCC/5.4.0-2.26/OpenMPI/1.10.4/numpy/1.8.2-Python-2.7.12
subdirs ['include']
== 2016-11-01 12:05:51,974 variables.py:200 WARNING flags_for_subdirs:
directory
/opt/easybuild/software/MPI/GCC/5.4.0-2.26/OpenMPI/1.10.4/numpy/1.8.2-Python-2.7.12/include
was not found
== 2016-11-01 12:05:51,974 variables.py:542 DEBUG Passthrough to LISTCLASS
element function append_subdirs
== 2016-11-01 12:05:51,974 variables.py:267 DEBUG _is_protected: False value
None (None)
== 2016-11-01 12:05:51,974 variables.py:297 DEBUG nappend: value None newvalue
[] position None
== 2016-11-01 12:05:51,975 variables.py:186 DEBUG append_subdirs: base
/opt/easybuild/software/MPI/GCC/5.4.0-2.26/OpenMPI/1.10.4/numpy/1.8.2-Python-2.7.12
subdirs ['lib64', 'lib']
== 2016-11-01 12:05:51,975 variables.py:200 WARNING flags_for_subdirs:
directory
/opt/easybuild/software/MPI/GCC/5.4.0-2.26/OpenMPI/1.10.4/numpy/1.8.2-Python-2.7.12/lib64
was not found
== 2016-11-01 12:05:51,975 variables.py:198 DEBUG append_subdirs: added
directory
/opt/easybuild/software/MPI/GCC/5.4.0-2.26/OpenMPI/1.10.4/numpy/1.8.2-Python-2.7.12/lib
