Dear easybuilders,
I am getting an error in the "installing" stage when I build the PythonPackage
Seaborn.
I am running eb 3.0.0 on RHEL 6.8 (which comes with Python 2.6).
I tried different things, and also disabled the sanity check. It looks like a
problem with the easyconfig, not with Seaborn, but I'm puzzled. Any ideas would
be appreciated!
Best regards,
Olaf
$ eb --module-syntax=Tcl --modules-tool=EnvironmentModulesC
Seaborn-0.7.1-foss-2014b-Python-2.7.12.eb
== processing EasyBuild easyconfig
/gpfs01/home/easybuild/eb20161117/easyconfigs/Seaborn-0.7.1-foss-2014b-Python-2.7.12.eb
== building and installing Seaborn/0.7.1-foss-2014b-Python-2.7.12...
== fetching files...
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== building...
== testing...
== installing...
Traceback (most recent call last):
File "/usr/lib64/python2.6/logging/handlers.py", line 76, in emit
if self.shouldRollover(record):
File "/usr/lib64/python2.6/logging/handlers.py", line 149, in shouldRollover
msg = "%s\n" % self.format(record)
File "/usr/lib64/python2.6/logging/__init__.py", line 662, in format
return fmt.format(record)
File "/usr/lib64/python2.6/logging/__init__.py", line 444, in format
record.message = record.getMessage()
File "/usr/lib64/python2.6/logging/__init__.py", line 314, in getMessage
msg = msg % self.args
TypeError: not enough arguments for format string
Traceback (most recent call last):
File "/usr/lib64/python2.6/logging/handlers.py", line 76, in emit
if self.shouldRollover(record):
File "/usr/lib64/python2.6/logging/handlers.py", line 149, in shouldRollover
msg = "%s\n" % self.format(record)
File "/usr/lib64/python2.6/logging/__init__.py", line 662, in format
return fmt.format(record)
File "/usr/lib64/python2.6/logging/__init__.py", line 444, in format
record.message = record.getMessage()
File "/usr/lib64/python2.6/logging/__init__.py", line 314, in getMessage
msg = msg % self.args
TypeError: not enough arguments for format string
Traceback (most recent call last):
File "/usr/lib64/python2.6/logging/handlers.py", line 76, in emit
if self.shouldRollover(record):
File "/usr/lib64/python2.6/logging/handlers.py", line 149, in shouldRollover
msg = "%s\n" % self.format(record)
File "/usr/lib64/python2.6/logging/__init__.py", line 662, in format
return fmt.format(record)
File "/usr/lib64/python2.6/logging/__init__.py", line 444, in format
record.message = record.getMessage()
File "/usr/lib64/python2.6/logging/__init__.py", line 314, in getMessage
msg = msg % self.args
TypeError: not enough arguments for format string
== FAILED: Installation ended unsuccessfully (build directory:
/tmp/Seaborn/0.7.1/foss-2014b-Python-2.7.12): build failed (first 300 chars):
cmd " /gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/bin/python
setup.py install
--prefix=/gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12
" exited with exitcode 1 and output:
running install
running bdist_egg
running egg_info
creating seaborn.egg-info
writing requireme
== Results of the build can be found in the log file(s)
/tmp/eb-QeRMV8/easybuild-Seaborn-0.7.1-20161201.093117.QHnBL.log
ERROR: Build of
/gpfs01/home/easybuild/eb20161117/easyconfigs/Seaborn-0.7.1-foss-2014b-Python-2.7.12.eb
failed (err: 'build failed (first 300 chars): cmd "
/gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/bin/python setup.py
install
--prefix=/gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12
" exited with exitcode 1 and output:\nrunning install\nrunning
bdist_egg\nrunning egg_info\ncreating seaborn.egg-info\nwriting requireme')
This is my easyconfig:
# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
# Author: Pablo Escobar Lopez
# Swiss Institute of Bioinformatics (SIB)
# Biozentrum - University of Basel
easyblock = "PythonPackage"
name = 'Seaborn'
version = '0.7.1'
homepage = 'http://stanford.edu/~mwaskom/software/seaborn/'
description = """ Seaborn is a Python visualization library based on matplotlib.
It provides a high-level interface for drawing attractive statistical graphics.
"""
toolchain = {'name': 'foss', 'version': '2014b'}
source_urls = ['https://github.com/mwaskom/seaborn/archive/']
sources = ['v%(version)s.tar.gz']
python = 'Python'
pyver = '2.7.12'
versionsuffix = "-%s-%s" % (python, pyver)
dependencies = [
(python, pyver),
('Tk', '8.6.1'),
]
#pyshortver = '.'.join(pyver.split('.')[:2])
#sanity_check_paths = {
# 'files': [],
# 'dirs':
['lib/python%(pyver)s/site-packages/seaborn-%%(version)s-py%(pyver)s.egg' %
{'pyver': pyshortver}],
#}
moduleclass = 'bio'
The log file looks like this:
== 2016-12-01 09:31:17,394 easyblock.py:261 INFO This is EasyBuild 3.0.0
(framework: 3.0.0, easyblocks: 3.0.0) on host byhm01.
== 2016-12-01 09:31:17,395 easyblock.py:267 INFO This is easyblock
PythonPackage from module easybuild.easyblocks.generic.pythonpackage
(/gpfs01/sw/easybuild/3.0.0/lib/python2.6/site-packages/easybuild_easyblocks-3.0.0-py2.6.egg/easybuild/easyblocks/generic/pythonpackage.pyo)
== 2016-12-01 09:31:17,395 easyblock.py:753 INFO Build dir set to
/tmp/Seaborn/0.7.1/foss-2014b-Python-2.7.12
== 2016-12-01 09:31:17,395 easyblock.py:792 INFO Software install dir set to
/gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12
== 2016-12-01 09:31:17,396 easyblock.py:797 INFO Module install dir set to
/gpfs01/sw/eb20161117/modules/all
== 2016-12-01 09:31:17,396 easyblock.py:246 INFO Init completed for application
name Seaborn version 0.7.1
== 2016-12-01 09:31:17,396 easyblock.py:2472 INFO Obtained application instance
of for Seaborn (easyblock: PythonPackage)
== 2016-12-01 09:31:17,397 build_log.py:220 INFO building and installing
Seaborn/0.7.1-foss-2014b-Python-2.7.12...
== 2016-12-01 09:31:17,397 build_log.py:220 INFO fetching files...
== 2016-12-01 09:31:17,397 easyblock.py:2266 INFO Starting fetch step
== 2016-12-01 09:31:17,397 easyblock.py:2269 INFO Running method fetch_step
part of step fetch
== 2016-12-01 09:31:17,398 easyblock.py:1446 WARNING Easyconfig does not
specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest
version
== 2016-12-01 09:31:17,398 filetools.py:229 INFO Command eb found at
/gpfs01/sw/easybuild/3.0.0/bin/eb
== 2016-12-01 09:31:17,399 easyblock.py:590 INFO Found file v0.7.1.tar.gz at
/gpfs01/sw/SOURCES/s/Seaborn/v0.7.1.tar.gz
== 2016-12-01 09:31:17,399 easyblock.py:350 INFO Added sources: [{'path':
'/gpfs01/sw/SOURCES/s/Seaborn/v0.7.1.tar.gz', 'cmd': None, 'finalpath':
'/tmp/Seaborn/0.7.1/foss-2014b-Python-2.7.12', 'name': 'v0.7.1.tar.gz',
'checksum': None}]
== 2016-12-01 09:31:17,400 easyblock.py:1487 INFO no patches provided
== 2016-12-01 09:31:17,401 easyblock.py:1496 INFO md5 checksum for
/gpfs01/sw/SOURCES/s/Seaborn/v0.7.1.tar.gz: f66200e3dbf0ebdd9bbdeba73303c974
== 2016-12-01 09:31:17,402 easyblock.py:1513 INFO Checking dirs that need to be
created:
['/gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12',
'/gpfs01/sw/eb20161117/modules/all/Seaborn',
'/gpfs01/sw/eb20161117/modules/bio/Seaborn']
== 2016-12-01 09:31:17,402 build_log.py:220 INFO creating build dir, resetting
environment...
== 2016-12-01 09:31:17,402 easyblock.py:2266 INFO Starting ready step
== 2016-12-01 09:31:17,403 easyblock.py:2269 INFO Running method
check_readiness_step part of step ready
== 2016-12-01 09:31:17,431 easyblock.py:1404 INFO Setting parallelism: 8
== 2016-12-01 09:31:17,455 easyblock.py:2269 INFO Running method make_builddir
part of step ready
== 2016-12-01 09:31:17,455 easyblock.py:817 INFO Found old directory
/tmp/Seaborn/0.7.1/foss-2014b-Python-2.7.12
== 2016-12-01 09:31:17,462 filetools.py:1058 INFO Path
/tmp/Seaborn/0.7.1/foss-2014b-Python-2.7.12 successfully removed.
== 2016-12-01 09:31:17,462 easyblock.py:824 INFO Removed old directory
/tmp/Seaborn/0.7.1/foss-2014b-Python-2.7.12
== 2016-12-01 09:31:17,463 filetools.py:953 INFO Creating directory
/tmp/Seaborn/0.7.1/foss-2014b-Python-2.7.12 (parents: True, set_gid: False,
sticky: False)
== 2016-12-01 09:31:17,463 easyblock.py:2269 INFO Running method
env_reset_changes part of step ready
== 2016-12-01 09:31:17,463 easyblock.py:2269 INFO Running method
handle_iterate_opts part of step ready
== 2016-12-01 09:31:17,464 build_log.py:220 INFO unpacking...
== 2016-12-01 09:31:17,464 easyblock.py:2266 INFO Starting source step
== 2016-12-01 09:31:17,464 easyblock.py:2269 INFO Running method checksum_step
part of step source
== 2016-12-01 09:31:17,465 easyblock.py:1529 INFO Checksum verification for
/gpfs01/sw/SOURCES/s/Seaborn/v0.7.1.tar.gz using None passed.
== 2016-12-01 09:31:17,465 easyblock.py:2269 INFO Running method extract_step
part of step source
== 2016-12-01 09:31:17,465 easyblock.py:1536 INFO Unpacking source v0.7.1.tar.gz
== 2016-12-01 09:31:17,732 build_log.py:220 INFO patching...
== 2016-12-01 09:31:17,733 easyblock.py:2266 INFO Starting patch step
== 2016-12-01 09:31:17,733 easyblock.py:2269 INFO Running method patch_step
part of step patch
== 2016-12-01 09:31:17,734 build_log.py:220 INFO preparing...
== 2016-12-01 09:31:17,734 easyblock.py:2266 INFO Starting prepare step
== 2016-12-01 09:31:17,734 easyblock.py:2269 INFO Running method prepare_step
part of step prepare
== 2016-12-01 09:31:17,950 toolchain.py:594 INFO List of toolchain dependency
modules and toolchain definition match!
== 2016-12-01 09:31:17,952 options.py:90 WARNING option: option with name
_opt_CC returns None
== 2016-12-01 09:31:17,952 options.py:90 WARNING option: option with name
_opt_CXX returns None
== 2016-12-01 09:31:17,952 options.py:90 WARNING option: option with name
_opt_F77 returns None
== 2016-12-01 09:31:17,952 options.py:90 WARNING option: option with name
_opt_F90 returns None
== 2016-12-01 09:31:17,953 options.py:90 WARNING option: option with name
_opt_FC returns None
== 2016-12-01 09:31:17,963 variables.py:200 WARNING flags_for_subdirs:
directory
/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib64 was
not found
== 2016-12-01 09:31:17,970 variables.py:200 WARNING flags_for_subdirs:
directory
/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib64 was
not found
== 2016-12-01 09:31:17,977 variables.py:200 WARNING flags_for_subdirs:
directory
/gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/lib64
was not found
== 2016-12-01 09:31:17,979 variables.py:200 WARNING flags_for_subdirs:
directory /gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/lib64 was not
found
== 2016-12-01 09:31:17,981 variables.py:200 WARNING flags_for_subdirs:
directory /gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/lib64 was not
found
== 2016-12-01 09:31:17,982 variables.py:200 WARNING flags_for_subdirs:
directory /gpfs01/sw/eb20161117/software/Tk/8.6.1-foss-2014b/lib64 was not found
== 2016-12-01 09:31:17,987 environment.py:97 INFO Environment variable
BLAS_INC_DIR set to
/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/include
(previously undefined)
== 2016-12-01 09:31:17,988 environment.py:97 INFO Environment variable
EBVARBLAS_INC_DIR set to
/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/include
(previously undefined)
== 2016-12-01 09:31:17,988 environment.py:97 INFO Environment variable
BLAS_LAPACK_INC_DIR set to
/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/include
(previously undefined)
== 2016-12-01 09:31:17,988 environment.py:97 INFO Environment variable
EBVARBLAS_LAPACK_INC_DIR set to
/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/include
(previously undefined)
== 2016-12-01 09:31:17,988 environment.py:97 INFO Environment variable
BLAS_LAPACK_LIB_DIR set to
/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib
(previously undefined)
== 2016-12-01 09:31:17,989 environment.py:97 INFO Environment variable
EBVARBLAS_LAPACK_LIB_DIR set to
/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib
(previously undefined)
== 2016-12-01 09:31:17,989 environment.py:97 INFO Environment variable
BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously
undefined)
== 2016-12-01 09:31:17,989 environment.py:97 INFO Environment variable
EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously
undefined)
== 2016-12-01 09:31:17,989 environment.py:97 INFO Environment variable
BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously
undefined)
== 2016-12-01 09:31:17,990 environment.py:97 INFO Environment variable
EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously
undefined)
== 2016-12-01 09:31:17,990 environment.py:97 INFO Environment variable
BLAS_LIB_DIR set to
/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib
(previously undefined)
== 2016-12-01 09:31:17,990 environment.py:97 INFO Environment variable
EBVARBLAS_LIB_DIR set to
/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib
(previously undefined)
== 2016-12-01 09:31:17,990 environment.py:97 INFO Environment variable
BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-01 09:31:17,991 environment.py:97 INFO Environment variable
EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously
undefined)
== 2016-12-01 09:31:17,991 environment.py:97 INFO Environment variable
BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-01 09:31:17,991 environment.py:97 INFO Environment variable
EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-01 09:31:17,991 environment.py:97 INFO Environment variable CC set
to gcc (previously undefined)
== 2016-12-01 09:31:17,992 environment.py:97 INFO Environment variable EBVARCC
set to gcc (previously undefined)
== 2016-12-01 09:31:17,992 environment.py:97 INFO Environment variable CFLAGS
set to -O2 -march=native (previously undefined)
== 2016-12-01 09:31:17,992 environment.py:97 INFO Environment variable
EBVARCFLAGS set to -O2 -march=native (previously undefined)
== 2016-12-01 09:31:17,992 environment.py:97 INFO Environment variable CPPFLAGS
set to
-I/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/include
-I/gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/include
-I/gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/include
-I/gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/include
-I/gpfs01/sw/eb20161117/software/Tk/8.6.1-foss-2014b/include (previously
undefined)
== 2016-12-01 09:31:17,993 environment.py:97 INFO Environment variable
EBVARCPPFLAGS set to
-I/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/include
-I/gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/include
-I/gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/include
-I/gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/include
-I/gpfs01/sw/eb20161117/software/Tk/8.6.1-foss-2014b/include (previously
undefined)
== 2016-12-01 09:31:17,993 environment.py:97 INFO Environment variable CXX set
to g++ (previously undefined)
== 2016-12-01 09:31:17,993 environment.py:97 INFO Environment variable EBVARCXX
set to g++ (previously undefined)
== 2016-12-01 09:31:17,993 environment.py:97 INFO Environment variable CXXFLAGS
set to -O2 -march=native (previously undefined)
== 2016-12-01 09:31:17,994 environment.py:97 INFO Environment variable
EBVARCXXFLAGS set to -O2 -march=native (previously undefined)
== 2016-12-01 09:31:17,994 environment.py:97 INFO Environment variable F77 set
to gfortran (previously undefined)
== 2016-12-01 09:31:17,994 environment.py:97 INFO Environment variable EBVARF77
set to gfortran (previously undefined)
== 2016-12-01 09:31:17,994 environment.py:97 INFO Environment variable F90 set
to gfortran (previously undefined)
== 2016-12-01 09:31:17,995 environment.py:97 INFO Environment variable EBVARF90
set to gfortran (previously undefined)
== 2016-12-01 09:31:17,995 environment.py:97 INFO Environment variable F90FLAGS
set to -O2 -march=native (previously undefined)
== 2016-12-01 09:31:17,995 environment.py:97 INFO Environment variable
EBVARF90FLAGS set to -O2 -march=native (previously undefined)
== 2016-12-01 09:31:17,995 environment.py:97 INFO Environment variable FC set
to gfortran (previously undefined)
== 2016-12-01 09:31:17,996 environment.py:97 INFO Environment variable EBVARFC
set to gfortran (previously undefined)
== 2016-12-01 09:31:17,996 environment.py:97 INFO Environment variable FCFLAGS
set to -O2 -march=native (previously undefined)
== 2016-12-01 09:31:17,996 environment.py:97 INFO Environment variable
EBVARFCFLAGS set to -O2 -march=native (previously undefined)
== 2016-12-01 09:31:17,996 environment.py:97 INFO Environment variable FFLAGS
set to -O2 -march=native (previously undefined)
== 2016-12-01 09:31:17,997 environment.py:97 INFO Environment variable
EBVARFFLAGS set to -O2 -march=native (previously undefined)
== 2016-12-01 09:31:17,997 environment.py:97 INFO Environment variable
FFTW_INC_DIR set to
/gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/include (previously
undefined)
== 2016-12-01 09:31:17,997 environment.py:97 INFO Environment variable
EBVARFFTW_INC_DIR set to
/gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/include (previously
undefined)
== 2016-12-01 09:31:17,997 environment.py:97 INFO Environment variable
FFTW_LIB_DIR set to /gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/lib
(previously undefined)
== 2016-12-01 09:31:17,998 environment.py:97 INFO Environment variable
EBVARFFTW_LIB_DIR set to
/gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/lib (previously undefined)
== 2016-12-01 09:31:17,998 environment.py:97 INFO Environment variable
FFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-12-01 09:31:17,998 environment.py:97 INFO Environment variable
EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-12-01 09:31:17,998 environment.py:97 INFO Environment variable
FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
== 2016-12-01 09:31:17,998 environment.py:97 INFO Environment variable
EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
== 2016-12-01 09:31:17,999 environment.py:97 INFO Environment variable
FFT_INC_DIR set to
/gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/include (previously
undefined)
== 2016-12-01 09:31:17,999 environment.py:97 INFO Environment variable
EBVARFFT_INC_DIR set to
/gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/include (previously
undefined)
== 2016-12-01 09:31:17,999 environment.py:97 INFO Environment variable
FFT_LIB_DIR set to /gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/lib
(previously undefined)
== 2016-12-01 09:31:17,999 environment.py:97 INFO Environment variable
EBVARFFT_LIB_DIR set to
/gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/lib (previously undefined)
== 2016-12-01 09:31:18,000 environment.py:97 INFO Environment variable
FFT_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-12-01 09:31:18,000 environment.py:97 INFO Environment variable
EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-12-01 09:31:18,000 environment.py:97 INFO Environment variable
FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2016-12-01 09:31:18,000 environment.py:97 INFO Environment variable
EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2016-12-01 09:31:18,001 environment.py:97 INFO Environment variable FLIBS
set to -lgfortran (previously undefined)
== 2016-12-01 09:31:18,001 environment.py:97 INFO Environment variable
EBVARFLIBS set to -lgfortran (previously undefined)
== 2016-12-01 09:31:18,001 environment.py:97 INFO Environment variable
LAPACK_INC_DIR set to
/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/include
(previously undefined)
== 2016-12-01 09:31:18,001 environment.py:97 INFO Environment variable
EBVARLAPACK_INC_DIR set to
/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/include
(previously undefined)
== 2016-12-01 09:31:18,002 environment.py:97 INFO Environment variable
LAPACK_LIB_DIR set to
/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib
(previously undefined)
== 2016-12-01 09:31:18,002 environment.py:97 INFO Environment variable
EBVARLAPACK_LIB_DIR set to
/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib
(previously undefined)
== 2016-12-01 09:31:18,002 environment.py:97 INFO Environment variable
LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-01 09:31:18,002 environment.py:97 INFO Environment variable
EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously
undefined)
== 2016-12-01 09:31:18,003 environment.py:97 INFO Environment variable
LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-01 09:31:18,003 environment.py:97 INFO Environment variable
EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously
undefined)
== 2016-12-01 09:31:18,003 environment.py:97 INFO Environment variable LDFLAGS
set to -L/gpfs01/sw/eb20161117/software/GCC/4.8.3/lib64
-L/gpfs01/sw/eb20161117/software/GCC/4.8.3/lib
-L/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib
-L/gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/lib
-L/gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/lib
-L/gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/lib
-L/gpfs01/sw/eb20161117/software/Tk/8.6.1-foss-2014b/lib (previously undefined)
== 2016-12-01 09:31:18,003 environment.py:97 INFO Environment variable
EBVARLDFLAGS set to -L/gpfs01/sw/eb20161117/software/GCC/4.8.3/lib64
-L/gpfs01/sw/eb20161117/software/GCC/4.8.3/lib
-L/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib
-L/gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/lib
-L/gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/lib
-L/gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/lib
-L/gpfs01/sw/eb20161117/software/Tk/8.6.1-foss-2014b/lib (previously undefined)
== 2016-12-01 09:31:18,004 environment.py:97 INFO Environment variable LIBBLAS
set to -lopenblas -lgfortran (previously undefined)
== 2016-12-01 09:31:18,004 environment.py:97 INFO Environment variable
EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined)
== 2016-12-01 09:31:18,004 environment.py:97 INFO Environment variable
LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-12-01 09:31:18,004 environment.py:97 INFO Environment variable
EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-12-01 09:31:18,005 environment.py:97 INFO Environment variable LIBFFT
set to -lfftw3 (previously undefined)
== 2016-12-01 09:31:18,005 environment.py:97 INFO Environment variable
EBVARLIBFFT set to -lfftw3 (previously undefined)
== 2016-12-01 09:31:18,005 environment.py:97 INFO Environment variable
LIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
== 2016-12-01 09:31:18,005 environment.py:97 INFO Environment variable
EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
== 2016-12-01 09:31:18,006 environment.py:97 INFO Environment variable
LIBLAPACK set to -lopenblas -lgfortran (previously undefined)
== 2016-12-01 09:31:18,006 environment.py:97 INFO Environment variable
EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined)
== 2016-12-01 09:31:18,006 environment.py:97 INFO Environment variable
LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-12-01 09:31:18,006 environment.py:97 INFO Environment variable
EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-12-01 09:31:18,007 environment.py:97 INFO Environment variable
LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-12-01 09:31:18,007 environment.py:97 INFO Environment variable
EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-12-01 09:31:18,007 environment.py:97 INFO Environment variable
LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-12-01 09:31:18,007 environment.py:97 INFO Environment variable
EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-12-01 09:31:18,008 environment.py:97 INFO Environment variable LIBS set
to -lm -lpthread (previously undefined)
== 2016-12-01 09:31:18,008 environment.py:97 INFO Environment variable
EBVARLIBS set to -lm -lpthread (previously undefined)
== 2016-12-01 09:31:18,008 environment.py:97 INFO Environment variable
LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
== 2016-12-01 09:31:18,008 environment.py:97 INFO Environment variable
EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously
undefined)
== 2016-12-01 09:31:18,009 environment.py:97 INFO Environment variable
LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously
undefined)
== 2016-12-01 09:31:18,009 environment.py:97 INFO Environment variable
EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran
(previously undefined)
== 2016-12-01 09:31:18,009 environment.py:97 INFO Environment variable
LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-12-01 09:31:18,009 environment.py:97 INFO Environment variable
EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-12-01 09:31:18,010 environment.py:97 INFO Environment variable
LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-12-01 09:31:18,010 environment.py:97 INFO Environment variable
EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-12-01 09:31:18,010 environment.py:97 INFO Environment variable MPICC
set to mpicc (previously undefined)
== 2016-12-01 09:31:18,010 environment.py:97 INFO Environment variable
EBVARMPICC set to mpicc (previously undefined)
== 2016-12-01 09:31:18,011 environment.py:97 INFO Environment variable MPICXX
set to mpicxx (previously undefined)
== 2016-12-01 09:31:18,011 environment.py:97 INFO Environment variable
EBVARMPICXX set to mpicxx (previously undefined)
== 2016-12-01 09:31:18,011 environment.py:97 INFO Environment variable MPIF77
set to mpifort (previously undefined)
== 2016-12-01 09:31:18,011 environment.py:97 INFO Environment variable
EBVARMPIF77 set to mpifort (previously undefined)
== 2016-12-01 09:31:18,012 environment.py:97 INFO Environment variable MPIF90
set to mpifort (previously undefined)
== 2016-12-01 09:31:18,012 environment.py:97 INFO Environment variable
EBVARMPIF90 set to mpifort (previously undefined)
== 2016-12-01 09:31:18,012 environment.py:97 INFO Environment variable MPIFC
set to mpifort (previously undefined)
== 2016-12-01 09:31:18,012 environment.py:97 INFO Environment variable
EBVARMPIFC set to mpifort (previously undefined)
== 2016-12-01 09:31:18,013 environment.py:97 INFO Environment variable
MPI_INC_DIR set to
/gpfs01/sw/eb20161117/software/OpenMPI/1.8.1-GCC-4.8.3/include (previously
undefined)
== 2016-12-01 09:31:18,013 environment.py:97 INFO Environment variable
EBVARMPI_INC_DIR set to
/gpfs01/sw/eb20161117/software/OpenMPI/1.8.1-GCC-4.8.3/include (previously
undefined)
== 2016-12-01 09:31:18,013 environment.py:97 INFO Environment variable
MPI_LIB_DIR set to /gpfs01/sw/eb20161117/software/OpenMPI/1.8.1-GCC-4.8.3/lib
(previously undefined)
== 2016-12-01 09:31:18,013 environment.py:97 INFO Environment variable
EBVARMPI_LIB_DIR set to
/gpfs01/sw/eb20161117/software/OpenMPI/1.8.1-GCC-4.8.3/lib (previously
undefined)
== 2016-12-01 09:31:18,014 environment.py:97 INFO Environment variable
MPI_LIB_SHARED set to
/gpfs01/sw/eb20161117/software/OpenMPI/1.8.1-GCC-4.8.3/lib/libmpi.so
(previously undefined)
== 2016-12-01 09:31:18,014 environment.py:97 INFO Environment variable
EBVARMPI_LIB_SHARED set to
/gpfs01/sw/eb20161117/software/OpenMPI/1.8.1-GCC-4.8.3/lib/libmpi.so
(previously undefined)
== 2016-12-01 09:31:18,014 environment.py:97 INFO Environment variable
MPI_LIB_STATIC set to (previously undefined)
== 2016-12-01 09:31:18,014 environment.py:97 INFO Environment variable
EBVARMPI_LIB_STATIC set to (previously undefined)
== 2016-12-01 09:31:18,015 environment.py:97 INFO Environment variable OMPI_CC
set to gcc (previously undefined)
== 2016-12-01 09:31:18,015 environment.py:97 INFO Environment variable
EBVAROMPI_CC set to gcc (previously undefined)
== 2016-12-01 09:31:18,015 environment.py:97 INFO Environment variable OMPI_CXX
set to g++ (previously undefined)
== 2016-12-01 09:31:18,015 environment.py:97 INFO Environment variable
EBVAROMPI_CXX set to g++ (previously undefined)
== 2016-12-01 09:31:18,016 environment.py:97 INFO Environment variable OMPI_F77
set to gfortran (previously undefined)
== 2016-12-01 09:31:18,016 environment.py:97 INFO Environment variable
EBVAROMPI_F77 set to gfortran (previously undefined)
== 2016-12-01 09:31:18,016 environment.py:97 INFO Environment variable OMPI_F90
set to gfortran (previously undefined)
== 2016-12-01 09:31:18,017 environment.py:97 INFO Environment variable
EBVAROMPI_F90 set to gfortran (previously undefined)
== 2016-12-01 09:31:18,017 environment.py:97 INFO Environment variable OMPI_FC
set to gfortran (previously undefined)
== 2016-12-01 09:31:18,017 environment.py:97 INFO Environment variable
EBVAROMPI_FC set to gfortran (previously undefined)
== 2016-12-01 09:31:18,017 environment.py:97 INFO Environment variable OPTFLAGS
set to -O2 -march=native (previously undefined)
== 2016-12-01 09:31:18,018 environment.py:97 INFO Environment variable
EBVAROPTFLAGS set to -O2 -march=native (previously undefined)
== 2016-12-01 09:31:18,018 environment.py:97 INFO Environment variable
PRECFLAGS set to (previously undefined)
== 2016-12-01 09:31:18,018 environment.py:97 INFO Environment variable
EBVARPRECFLAGS set to (previously undefined)
== 2016-12-01 09:31:18,018 environment.py:97 INFO Environment variable
SCALAPACK_INC_DIR set to
/gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/include
(previously undefined)
== 2016-12-01 09:31:18,019 environment.py:97 INFO Environment variable
EBVARSCALAPACK_INC_DIR set to
/gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/include
(previously undefined)
== 2016-12-01 09:31:18,019 environment.py:97 INFO Environment variable
SCALAPACK_LIB_DIR set to
/gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/lib
(previously undefined)
== 2016-12-01 09:31:18,019 environment.py:97 INFO Environment variable
EBVARSCALAPACK_LIB_DIR set to
/gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/lib
(previously undefined)
== 2016-12-01 09:31:18,019 environment.py:97 INFO Environment variable
SCALAPACK_MT_STATIC_LIBS set to
libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2016-12-01 09:31:18,020 environment.py:97 INFO Environment variable
EBVARSCALAPACK_MT_STATIC_LIBS set to
libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2016-12-01 09:31:18,020 environment.py:97 INFO Environment variable
SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a
(previously undefined)
== 2016-12-01 09:31:18,020 environment.py:97 INFO Environment variable
EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a
(previously undefined)
== 2016-12-01 09:31:18,020 easyblock.py:1326 INFO Using
/tmp/Seaborn/0.7.1/foss-2014b-Python-2.7.12/seaborn-0.7.1/ as start dir
== 2016-12-01 09:31:18,021 filetools.py:229 INFO Command python found at
/gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/bin/python
== 2016-12-01 09:31:18,021 pythonpackage.py:289 INFO Python command being used:
/gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/bin/python
== 2016-12-01 09:31:18,128 build_log.py:220 INFO configuring...
== 2016-12-01 09:31:18,129 easyblock.py:2266 INFO Starting configure step
== 2016-12-01 09:31:18,129 easyblock.py:2269 INFO Running method configure_step
part of step configure
== 2016-12-01 09:31:18,211 environment.py:97 INFO Environment variable
PYTHONNOUSERSITE set to 1 (previously undefined)
== 2016-12-01 09:31:18,262 build_log.py:220 INFO building...
== 2016-12-01 09:31:18,262 easyblock.py:2266 INFO Starting build step
== 2016-12-01 09:31:18,263 easyblock.py:2269 INFO Running method build_step
part of step build
== 2016-12-01 09:31:18,589 run.py:443 INFO cmd "
/gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/bin/python setup.py
build " exited with exitcode 0 and output:
running build
running build_py
creating build
creating build/lib
creating build/lib/seaborn
copying seaborn/linearmodels.py -> build/lib/seaborn
copying seaborn/utils.py -> build/lib/seaborn
copying seaborn/apionly.py -> build/lib/seaborn
copying seaborn/miscplot.py -> build/lib/seaborn
copying seaborn/xkcd_rgb.py -> build/lib/seaborn
copying seaborn/crayons.py -> build/lib/seaborn
copying seaborn/widgets.py -> build/lib/seaborn
copying seaborn/distributions.py -> build/lib/seaborn
copying seaborn/__init__.py -> build/lib/seaborn
copying seaborn/rcmod.py -> build/lib/seaborn
copying seaborn/palettes.py -> build/lib/seaborn
copying seaborn/algorithms.py -> build/lib/seaborn
copying seaborn/matrix.py -> build/lib/seaborn
copying seaborn/categorical.py -> build/lib/seaborn
copying seaborn/axisgrid.py -> build/lib/seaborn
copying seaborn/timeseries.py -> build/lib/seaborn
creating build/lib/seaborn/external
copying seaborn/external/six.py -> build/lib/seaborn/external
copying seaborn/external/__init__.py -> build/lib/seaborn/external
copying seaborn/external/husl.py -> build/lib/seaborn/external
creating build/lib/seaborn/tests
copying seaborn/tests/test_matrix.py -> build/lib/seaborn/tests
copying seaborn/tests/test_categorical.py -> build/lib/seaborn/tests
copying seaborn/tests/test_axisgrid.py -> build/lib/seaborn/tests
copying seaborn/tests/__init__.py -> build/lib/seaborn/tests
copying seaborn/tests/test_miscplot.py -> build/lib/seaborn/tests
copying seaborn/tests/test_distributions.py -> build/lib/seaborn/tests
copying seaborn/tests/test_utils.py -> build/lib/seaborn/tests
copying seaborn/tests/test_algorithms.py -> build/lib/seaborn/tests
copying seaborn/tests/test_linearmodels.py -> build/lib/seaborn/tests
copying seaborn/tests/test_palettes.py -> build/lib/seaborn/tests
copying seaborn/tests/test_rcmod.py -> build/lib/seaborn/tests
== 2016-12-01 09:31:18,590 build_log.py:220 INFO testing...
== 2016-12-01 09:31:18,590 easyblock.py:2266 INFO Starting test step
== 2016-12-01 09:31:18,591 easyblock.py:2269 INFO Running method test_step part
of step test
== 2016-12-01 09:31:18,591 build_log.py:220 INFO installing...
== 2016-12-01 09:31:18,592 easyblock.py:2266 INFO Starting install step
== 2016-12-01 09:31:18,592 easyblock.py:2269 INFO Running method
stage_install_step part of step install
== 2016-12-01 09:31:18,592 easyblock.py:2269 INFO Running method
make_installdir part of step install
== 2016-12-01 09:31:18,593 easyblock.py:817 INFO Found old directory
/gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12
== 2016-12-01 09:31:19,332 filetools.py:1058 INFO Path
/gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12
successfully removed.
== 2016-12-01 09:31:19,332 easyblock.py:824 INFO Removed old directory
/gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12
== 2016-12-01 09:31:19,332 filetools.py:953 INFO Creating directory
/gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12 (parents:
True, set_gid: False, sticky: False)
== 2016-12-01 09:31:19,333 easyblock.py:2269 INFO Running method install_step
part of step install
== 2016-12-01 09:31:19,333 filetools.py:953 INFO Creating directory
/gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12/lib/python2.7/site-packages
(parents: True, set_gid: False, sticky: False)
== 2016-12-01 09:31:19,334 environment.py:97 INFO Environment variable
PYTHONPATH set to
/gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12/lib/python2.7/site-packages
(previously undefined)
== 2016-12-01 09:47:09,905 easyblock.py:2498 WARNING build failed (first 300
chars): cmd "
/gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/bin/python setup.py
install
--prefix=/gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12
" exited with exitcode 1 and output:
running install
running bdist_egg
running egg_info
creating seaborn.egg-info
writing requireme
== 2016-12-01 09:47:09,905 easyblock.py:276 INFO Closing log for application
name Seaborn version 0.7.1
