On 01/02/2017 15:32, Pablo Escobar Lopez wrote:
btw, I have iomkl/2017.01
with OpenMPI/2.0.1-iccifort-2017.1.132-GCC-5.4.0-2.26 and I had to
apply this patch to be able to compile it with slurm support
https://www.mail-archive.com/[email protected]/msg30048.html
I suppose this is fixed in 2.0.2
seems to be, yes, see https://github.com/open-mpi/ompi/pull/2131
2017-02-01 15:01 GMT+01:00 Kenneth Hoste <[email protected]
<mailto:[email protected]>>:
Hi Joachim,
On 01/02/2017 14:59, Joachim Hein wrote:
HI Kenneth et al.
Can’t make if for todays telcon, but got the below this morning.
You might want to considerer for foss/2017a, which is on the
agenda. We’ll live with foss/2017a until August or so.
Thanks for the heads-up, I was already aware of it.
The PR for foss/2017a has already been updated accordingly, see
https://github.com/hpcugent/easybuild-easyconfigs/pull/3968
<https://github.com/hpcugent/easybuild-easyconfigs/pull/3968> .
I also bumped FFTW to 3.3.6 which was released two weeks ago.
regards,
Kenneth
Joachim
Begin forwarded message:
*From: *"Jeff Squyres (jsquyres)" <[email protected]
<mailto:[email protected]>>
*Subject: **[Open MPI Announce] Open MPI v2.0.2 released*
*Date: *1 February 2017 at 01:40:35 GMT+1
*To: *Open MPI Announcements <[email protected]
<mailto:[email protected]>>
*Reply-To: *<[email protected] <mailto:[email protected]>>
The Open MPI Team, representing a consortium of research,
academic, and industry partners, is pleased to announce the
release of Open MPI version 2.0.2.
v2.0.2 is a bug fix release that includes a variety of bug fixes
and some performance fixes. All users are encouraged to upgrade
to v2.0.2 when possible.
Version 2.0.2 can be downloaded from the main Open MPI web site:
https://www.open-mpi.org/software/ompi/v2.0/
<https://www.open-mpi.org/software/ompi/v2.0/>
NEWS
2.0.2 -- 31 January 2017
-------------------------
Bug fixes/minor improvements:
- Fix a problem with MPI_FILE_WRITE_SHARED when using
MPI_MODE_APPEND and
Open MPI's native MPI-IO implementation. Thanks to Nicolas Joly for
reporting.
- Fix a typo in the MPI_WIN_GET_NAME man page. Thanks to
Nicolas Joly
for reporting.
- Fix a race condition with ORTE's session directory setup.
Thanks to
@tbj900 for reporting this issue.
- Fix a deadlock issue arising from Open MPI's approach to
catching calls to
munmap. Thanks to Paul Hargrove for reporting and helping to
analyze this
problem.
- Fix a problem with PPC atomics which caused make check to fail
unless builtin
atomics configure option was enabled. Thanks to Orion Poplawski
for reporting.
- Fix a problem with use of x86_64 cpuid instruction which led
to segmentation
faults when Open MPI was configured with -O3 optimization.
Thanks to Mark
Santcroos for reporting this problem.
- Fix a problem when using built in atomics configure options on
PPC platforms
when building 32 bit applications. Thanks to Paul Hargrove for
reporting.
- Fix a problem with building Open MPI against an external hwloc
installation.
Thanks to Orion Poplawski for reporting this issue.
- Remove use of DATE in the message queue version string
reported to debuggers to
insure bit-wise reproducibility of binaries. Thanks to
Alastair McKinstry
for help in fixing this problem.
- Fix a problem with early exit of a MPI process without calling
MPI_FINALIZE
or MPI_ABORT that could lead to job hangs. Thanks to Christof
Koehler for
reporting.
- Fix a problem with forwarding of SIGTERM signal from mpirun to
MPI processes
in a job. Thanks to Noel Rycroft for reporting this problem
- Plug some memory leaks in MPI_WIN_FREE discovered using
Valgrind. Thanks
to Joseph Schuchart for reporting.
- Fix a problems MPI_NEIGHOR_ALLTOALL when using a communicator
with an empty topology
graph. Thanks to Daniel Ibanez for reporting.
- Fix a typo in a PMIx component help file. Thanks to @njoly
for reporting this.
- Fix a problem with Valgrind false positives when using Open
MPI's internal memchecker.
Thanks to Yvan Fournier for reporting.
- Fix a problem with MPI_FILE_DELETE returning MPI_SUCCESS when
deleting a non-existent file. Thanks to Wei-keng Liao for
reporting.
- Fix a problem with MPI_IMPROBE that could lead to hangs in
subsequent MPI
point to point or collective calls. Thanks to Chris Pattison
for reporting.
- Fix a problem when configure Open MPI for powerpc with
--enable-mpi-cxx
enabled. Thanks to Alastair McKinstry for reporting.
- Fix a problem using MPI_IALLTOALL with MPI_IN_PLACE argument.
Thanks to
Chris Ward for reporting.
- Fix a problem using MPI_RACCUMULATE with the Portals4
transport. Thanks to
@PDeveze for reporting.
- Fix an issue with static linking and duplicate symbols arising
from PMIx
Slurm components. Thanks to Limin Gu for reporting.
- Fix a problem when using MPI dynamic memory windows. Thanks to
Christoph Niethammer for reporting.
- Fix a problem with Open MPI's pkgconfig files. Thanks to
Alastair McKinstry
for reporting.
- Fix a problem with MPI_IREDUCE when the same buffer is
supplied for the
send and recv buffer arguments. Thanks to Valentin Petrov for
reporting.
- Fix a problem with atomic operations on PowerPC. Thanks to Paul
Hargrove for reporting.
Known issues (to be addressed in v2.0.3):
- See the list of fixes slated for v2.0.3 here:
https://github.com/open-mpi/ompi/milestone/23
<https://github.com/open-mpi/ompi/milestone/23>
--
Jeff Squyres
[email protected] <mailto:[email protected]>
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https://rfd.newmexicoconsortium.org/mailman/listinfo/announce
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--
Pablo Escobar López
HPC systems engineer
sciCORE, University of Basel
SIB Swiss Institute of Bioinformatics
http://scicore.unibas.ch
