No it's not submitted to a scheduler (the scheduler is configured in EasyBuild but I'm not using it, ie. not using --job)
2017-02-22 12:52 GMT+01:00 Robert Schmidt <rjesc...@gmail.com>: > As a default sanity check for python packages, easybuild will try to > import the main module. In this case it seems like the import was enough to > trigger an mpi failure. > > It is a bit weird that the import is enough to cause that problem, but > maybe there is something else in the environment that makes it think it is > being run as part of an MPI job? Is the build being submitted to a > scheduler? > > On Wed, Feb 22, 2017 at 5:36 AM Yann Sagon <yann.sa...@unige.ch> wrote: > >> Hello, >> >> I'm back again with my problem (I had a similar problem with Rmpi), maybe >> someone has an idea of what is going on. >> >> I tried to install Theano-0.8.2-foss-2016a-Python-2.7.11.eb and had the >> following error: >> >> >> == 2017-02-22 11:19:25,788 build_log.py:147 ERROR EasyBuild crashed with >> an error (at ?:124 in __init__): Sanity check failed: Theano failed to >> install, cmd >> '/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/Python/2.7.11/bin/python >> -c "import theano"' (stdin: None) output: ------------------------------ >> -------------------------------------------- >> It looks like orte_init failed for some reason; your parallel process is >> likely to abort. There are many reasons that a parallel process can >> fail during orte_init; some of which are due to configuration or >> environment problems. This failure appears to be an internal failure; >> here's some additional information (which may only be relevant to an >> Open MPI developer): >> >> PMI2_Job_GetId failed failed >> --> Returned value (null) (14) instead of ORTE_SUCCESS >> >> It worth be said that I have compiled OpenMPI with the following >> additional flags: >> >> configopts += '--with-slurm --with-pmi ' >> >> Thanks for any suggestion >> >> -- >> Yann SAGON >> Ingénieur système HPC >> 24 Rue du Général-Dufour >> 1211 Genève 4 - Suisse >> Tél. : +41 (0)22 379 7737 <+41%2022%20379%2077%2037> >> yann.sa...@unige.ch - www.unige.ch >> > -- Yann SAGON Ingénieur système HPC 24 Rue du Général-Dufour 1211 Genève 4 - Suisse Tél. : +41 (0)22 379 7737 yann.sa...@unige.ch - www.unige.ch
