It looks like the issue was with centos vs RHEL. I was able to build binutils 2.26 using Red Hat Enterprise Linux Server release 7.2, while it didn't work when running CentOS Linux release 7.3.1611 (Core)
From: [email protected] [mailto:[email protected]] On Behalf Of Siddiqui, Shahzeb Sent: Monday, June 26, 2017 1:49 PM To: [email protected] Subject: [easybuild] FW: fosscuda-2017a issue Hello, I am having an issue building binutils 2.26 for some reason this is holding me back in building fosscuda toolchain. I have used eb 3.2.1 and eb 3.3.0 with centos 7 and the issue is the same. Has anyone else ran into an issue with binutils 2.26. Can anyone build the GCC-5.4.0-2.26.eb that is in eb repo. I am doing my builds in Singularity, if you want to recreate the environment please see https://github.com/pescobar/singularity-easybuild<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_pescobar_singularity-2Deasybuild&d=DwMFAg&c=UE1eNsedaKncO0Yl_u8bfw&r=RMJdCm7m5fiPWhajwKUnEW5yn4eK2YdUWW-MLVShghg&m=fgwDmobzorOxJhf56NZ_kaUST__kiMAAlJ3SNoSn1z4&s=_o-okG-TjlWtlzynXWCCi3kKonc-lXwHKH1Jh8OSQT4&e=> Thanks From: Siddiqui, Shahzeb Sent: Monday, June 26, 2017 11:08 AM To: 'Vanzo, Davide' Subject: fosscuda-2017a issue Hi Davide, Please see the error and log file. Singularity.centos-7.2-easybuild-3.2.0.img> eb fosscuda-2017a.eb --robot -D == temporary log file in case of crash /tmp/eb-ALY_WQ/easybuild-tLDxyC.log Dry run: printing build status of easyconfigs and dependencies CFGS=/home/siddis14/easybuild-easyconfigs/easybuild/easyconfigs * [x] $CFGS/m/M4/M4-1.4.17.eb (module: M4/1.4.17) * [x] $CFGS/b/Bison/Bison-3.0.4.eb (module: Bison/3.0.4) * [x] $CFGS/f/flex/flex-2.6.0.eb (module: flex/2.6.0) * [x] $CFGS/z/zlib/zlib-1.2.8.eb (module: zlib/1.2.8) * [ ] $CFGS/b/binutils/binutils-2.26.eb (module: binutils/2.26) * [ ] $CFGS/g/GCCcore/GCCcore-5.4.0.eb (module: GCCcore/5.4.0) * [ ] $CFGS/m/M4/M4-1.4.17-GCCcore-5.4.0.eb (module: M4/1.4.17-GCCcore-5.4.0) * [ ] $CFGS/z/zlib/zlib-1.2.8-GCCcore-5.4.0.eb (module: zlib/1.2.8-GCCcore-5.4.0) * [ ] $CFGS/b/Bison/Bison-3.0.4-GCCcore-5.4.0.eb (module: Bison/3.0.4-GCCcore-5.4.0) * [ ] $CFGS/f/flex/flex-2.6.0-GCCcore-5.4.0.eb (module: flex/2.6.0-GCCcore-5.4.0) * [ ] $CFGS/b/binutils/binutils-2.26-GCCcore-5.4.0.eb (module: binutils/2.26-GCCcore-5.4.0) * [ ] $CFGS/g/GCC/GCC-5.4.0-2.26.eb (module: GCC/5.4.0-2.26) * [ ] $CFGS/c/CUDA/CUDA-8.0.61_375.26-GCC-5.4.0-2.26.eb (module: CUDA/8.0.61_375.26-GCC-5.4.0-2.26) * [ ] $CFGS/g/gcccuda/gcccuda-2017a.eb (module: gcccuda/2017a) * [ ] $CFGS/n/numactl/numactl-2.0.11-gcccuda-2017a.eb (module: numactl/2.0.11-gcccuda-2017a) * [ ] $CFGS/o/OpenBLAS/OpenBLAS-0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1.eb (module: OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1) * [ ] $CFGS/h/hwloc/hwloc-1.11.5-gcccuda-2017a.eb (module: hwloc/1.11.5-gcccuda-2017a) * [ ] $CFGS/o/OpenMPI/OpenMPI-2.0.2-gcccuda-2017a.eb (module: OpenMPI/2.0.2-gcccuda-2017a) * [ ] $CFGS/g/gompic/gompic-2017a.eb (module: gompic/2017a) * [ ] $CFGS/f/FFTW/FFTW-3.3.4-gompic-2017a.eb (module: FFTW/3.3.4-gompic-2017a) * [ ] $CFGS/o/OpenBLAS/OpenBLAS-0.2.18-gompic-2017a-LAPACK-3.6.1.eb (module: OpenBLAS/0.2.18-gompic-2017a-LAPACK-3.6.1) * [ ] $CFGS/s/ScaLAPACK/ScaLAPACK-2.0.2-gompic-2017a-OpenBLAS-0.2.18-LAPACK-3.6.1.eb (module: ScaLAPACK/2.0.2-gompic-2017a-OpenBLAS-0.2.18-LAPACK-3.6.1) * [ ] $CFGS/f/fosscuda/fosscuda-2017a.eb (module: fosscuda/2017a) == Temporary log file(s) /tmp/eb-ALY_WQ/easybuild-tLDxyC.log* have been removed. == Temporary directory /tmp/eb-ALY_WQ has been removed. Singularity.centos-7.2-easybuild-3.2.0.img> eb fosscuda-2017a.eb --robot == temporary log file in case of crash /tmp/eb-0A02Em/easybuild-3yOsLG.log == resolving dependencies ... == processing EasyBuild easyconfig /home/siddis14/easybuild-easyconfigs/easybuild/easyconfigs/b/binutils/binutils-2.26.eb == building and installing binutils/2.26... == fetching files... == creating build dir, resetting environment... == unpacking... == patching... == preparing... == configuring... == building... == FAILED: Installation ended unsuccessfully (build directory: /home/siddis14/.local/easybuild/build/binutils/2.26/dummy-): build failed (first 300 chars): cmd " env LIBS='-Wl,-rpath=/usr/lib -Wl,-rpath=/usr/lib64' make -j 80 CFLAGS="-g -O2 -fPIC" " exited with exitcode 2 and output: make[1]: Entering directory `/home/siddis14/.local/easybuild/build/binutils/2.26/dummy-/binutils-2.26' make[1]: Nothing to be done for `all-target'. Configuring in ./int == Results of the build can be found in the log file(s) /tmp/eb-0A02Em/easybuild-binutils-2.26-20170626.150414.yertf.log ERROR: Build of /home/siddis14/easybuild-easyconfigs/easybuild/easyconfigs/b/binutils/binutils-2.26.eb failed (err: 'build failed (first 300 chars): cmd " env LIBS=\'-Wl,-rpath=/usr/lib -Wl,-rpath=/usr/lib64\' make -j 80 CFLAGS="-g -O2 -fPIC" " exited with exitcode 2 and output:\nmake[1]: Entering directory `/home/siddis14/.local/easybuild/build/binutils/2.26/dummy-/binutils-2.26\'\nmake[1]: Nothing to be done for `all-target\'.\nConfiguring in ./int') Shahzeb Siddiqui HPC Linux Engineer B2220-447.2 Groton, CT
