Dear Yoshihito,
It seems like either this version of GCC or the version of binutils that
is being used to build it (binutils 2.25) is too old for your recent
operating system (or the binutils it includes...).
Is there a reason why you specifically need that fairly old version of GCC?
regards,
Kenneth
On 24/08/2017 14:31, Yoshihito Horigome wrote:
Hi, all
I could not judge whether it was an issue or not, so write it here.
In Easybuild 3.3.1, when attempting to build GCCcore-4.9.3 which is
the core of some applications,
the following error occurs at the stage of configure.
$ cat /etc/redhat-release
CentOS Linux release 7.3.1611 (AltArch)
--
It was created by GNU OpenMP Runtime Library configure 1.0, which was
generated by GNU Autoconf 2.64. Invocation command line was
<snip>
## ----------- ##
## Core tests. ##
## ----------- ##
*
*
configure:2467: creating cache ./config.cache
configure:2550: checking for --enable-version-specific-runtime-libs
configure:2565: result: no
configure:2573: checking for --enable-generated-files-in-srcdir
configure:2588: result: no
configure:2645: checking build system type
configure:2659: result: aarch64-unknown-linux-gnu
configure:2679: checking host system type
configure:2692: result: aarch64-unknown-linux-gnu
configure:2712: checking target system type
configure:2725: result: aarch64-unknown-linux-gnu
configure:2782: checking for a BSD-compatible install
configure:2850: result: /usr/bin/install -c
configure:2861: checking whether build environment is sane
configure:2911: result: yes
configure:3052: checking for a thread-safe mkdir -p
configure:3091: result: /usr/bin/mkdir -p
configure:3104: checking for gawk
configure:3131: result: gawk
configure:3142: checking whether make sets $(MAKE)
configure:3164: result: yes
configure:3328: checking for aarch64-unknown-linux-gnu-gcc
configure:3355: result:
/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/xgcc
-B/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/
-B/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/bin/
-B/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/lib/
-isystem
/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/include
-isystem
/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/sys-include
configure:3624: checking for C compiler version
configure:3633:
/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/xgcc
-B/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/
-B/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/bin/
-B/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/lib/
-isystem
/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/include
-isystem
/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/sys-include
--version >&5
/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/xgcc:
error while loading shared libraries: libgcc_s.so.1: ELF load command
alignment not page-aligned
configure:3644: $? = 127
configure:3633:
/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/xgcc
-B/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/
-B/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/bin/
-B/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/lib/
-isystem
/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/include
-isystem
/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/sys-include
-v >&5
/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/xgcc:
error while loading shared libraries: libgcc_s.so.1: ELF load command
alignment not page-aligned
configure:3644: $? = 127
configure:3633:
/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/xgcc
-B/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/
-B/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/bin/
-B/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/lib/
-isystem
/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/include
-isystem
/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/sys-include
-V >&5
/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/xgcc:
error while loading shared libraries: libgcc_s.so.1: ELF load command
alignment not page-aligned
configure:3644: $? = 127
configure:3633:
/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/xgcc
-B/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/
-B/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/bin/
-B/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/lib/
-isystem
/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/include
-isystem
/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/sys-include
-qversion >&5
/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/xgcc:
error while loading shared libraries: libgcc_s.so.1: ELF load command
alignment not page-aligned
configure:3644: $? = 127
configure:3664: checking for C compiler default output file name
configure:3686:
/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/xgcc
-B/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/
-B/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/bin/
-B/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/lib/
-isystem
/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/include
-isystem
/home/horigome/easybuild/software/GCCcore/4.9.3/aarch64-unknown-linux-gnu/sys-include
-g -O2 conftest.c >&5
/home/horigome/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/xgcc:
error while loading shared libraries: libgcc_s.so.1: ELF load command
alignment not page-aligned
configure:3690: $? = 127
configure:3727: result:
configure: failed program was:
https://gist.github.com/kometchtech/d6a1617531248273fb2647b49db8c827
When building in some aarch64 environments there was never a problem.
In addition, I set LD_LIBRARY_PATH to /usr/lib and /usr/lib64 in the
problem environment,
but the situation did not change.
However, when configure is executed in the current directory, this
error did not occur.
If there are problems other than LD_LIBRARY_PATH, which one should be
checked?
Please kindly advise.
Best regards.
