@kenneth thanks, it's working fine like that. @dey, I'll try to remember to use this script for next release of R. Fortunately I had only 3 packages that wasn't working.
Best 2017-11-22 19:34 GMT+01:00 John Dey <j...@fuzzdog.com>: > Shameless Plug; > Use easy_update.py to update your very large exts_list for R and Python > EasyConfig files. The script will resolve dependencies and update version > information. Updating 400 R modules by hand could take days. > > Download easy_update.py from the scripts directory of: > https://github.com/FredHutch/easybuild-life-sciences > > John Dey > j...@fuzzdog.com > > On Tue, Nov 21, 2017 at 12:37 AM, Kenneth Hoste <kenneth.ho...@ugent.be> > wrote: > >> Dear Yann, >> >> On 21/11/2017 09:34, Yann Sagon wrote: >> >> Hello, >> >> I'm trying to build R using R-3.3.1-foss-2016b.eb with the flag >> --try-software-version=3.4.2 >> >> It's crashing during the build of some extensions. >> >> I did a correction on a dependency and wanted to continue the build. >> >> Is there a way to "resume" the build where it crashed? >> >> I tried to use --skip, but it seems it's starting from scratch and as >> there are ~400 extensions, this is takes time. >> >> >> --skip only works when you already have a module >> >> Here's what you can do: >> >> * run "eb --module-only R.eb" after editing the R easyconfig to use >> "exts_list = []" (i.e. no extensions) >> >> * reinstate the list of extensions in the R easyconfig, and then run "eb >> R.eb --skip --force" to let EasyBuild skip already extensions and install >> the missing ones >> >> >> >> regards, >> >> Kenneth >> >> >> >> -- >> Yann SAGON >> Ingénieur système HPC >> 24 Rue du Général-Dufour >> <https://maps.google.com/?q=24+Rue+du+G%C3%A9n%C3%A9ral-Dufour+%0D+1211+Gen%C3%A8ve&entry=gmail&source=g> >> 1211 Genève 4 - Suisse >> Tél. : +41 (0)22 379 7737 <+41%2022%20379%2077%2037> >> yann.sa...@unige.ch - www.unige.ch >> >> >> > -- Yann SAGON Ingénieur système HPC 24 Rue du Général-Dufour 1211 Genève 4 - Suisse Tél. : +41 (0)22 379 7737 yann.sa...@unige.ch - www.unige.ch
